# Draft 2008 California 303(d)/305(b) Integrated Report

# Supporting Information

## Regional Board 5 - Central Valley Region

Water Body Name: | San Joaquin River ( Mud Slough to Merced River)
Water Body ID: | CAR5357000020021002094621
Water Body Type: | River & Stream

DECISION ID | 6963
Pollutant: | Unknown Toxicity
Final Listing Decision: | Do Not Delist from 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | List on 303(d) list (TMDL required list)(2006)
Revision Status | Revised
Sources: | Source Unknown
Expected TMDL Completion Date: | 2019
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | This pollutant is being considered for removal on the section 303(d) list under sections 2.2 and 3.6 of the Listing Policy. Under 3.6 of the Policy, a minimum of one line of evidence is needed to assess listing status. [NUMBER] lines of evidence are available in the administrative record to assess this pollutant. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against removing this water segment-pollutant combination from the section 303(d) list. There is sufficient justification to place it in the Being Addressed portion of the 303(d) list because a TMDL has been completed and approved by RWQCB and USEPA, and is expected to result in attainment of the standard.. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1 of the Policy. 3. Seven of 21 samples tested with fathead minnow (7-day chronic toxicity tests) exceeded the narrative toxicity objective and these exceed the allowable frequency listed in Table 4.1 of the Listing Policy. 4. The San Joaquin River Organophosphorous Pesticide TMDL has been approved by the Central Valley Water Board in 2005 and approved by USEPA on 12/20/2006. 5. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.
RWQCB Board Decision / Staff Recommendation: | After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be removed from the section 303(d) list because applicable water quality standards for the pollutant are being exceeded.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 6963

LOE ID: | 22682
Pollutant: | Toxicity
LOE Subgroup: | Toxicity
Matrix: | Water
Fraction: | Total
Beneficial Use: | Warm Freshwater Habitat
Aquatic Life Use: | Warm Freshwater Habitat
Number of Samples: | 4
Number of Exceedances: | 0
Data and Information Type: | TOXICITY TESTING
Data Used to Asses Water Quality: | None of 4 samples tested with Selenastrum capricornutum were toxic and violated the narrative toxicity objective.
Data Reference: | Monitoring Data from the Surface Water Ambient Monitoring Program (SWAMP), San Joaquin River Basin - 2007 Data Review
Water Quality Objective/Criterion: | All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. This objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances. (CVRWQCB, 2007)
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
Evaluation Guideline: | Statistically significant difference from control using a t-test with 4-day chronic-style toxicity tests.
Guideline Reference: | Short-term Methods for Estimating the Chronic Toxicity of Effluents and Receiving Waters to Freshwater and Marine Organisms, Fourth Edition. U.S. Environmental Protection Agency Office of Water, Washington, DC EPA-821-R-02-013
Spatial Representation: | Samples were collected from San Joaquin River at Hills Ferry.
Temporal Representation: | Samples were collected from December 2005 - July 2006
Environmental Conditions: |
QAPP Information: | Data quality: Excellent. Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s): | Quality Assurance Management Plan for the State of California's Surface Water Ambient Monitoring Program. Sacramento, CA. State Water Resources Control Board. SWAMP. December 2002 (1st version)
LOE ID: | 22681
Pollutant: | Toxicity
LOE Subgroup: | Toxicity
Matrix: | Water
Fraction: | Total
Beneficial Use: | Warm Freshwater Habitat
Aquatic Life Use: | Warm Freshwater Habitat
Number of Samples: | 21
Number of Exceedances: | 7
Data and Information Type: | TOXICITY TESTING
Data Used to Asses Water Quality: | 7 of the 21 samples tested with Pimephales promelas were toxic and violated the narrative toxicity objective. Seven samples collected at Hills Ferry exhibited a statistically significant decrease in survival compared to the control. The sample dates and percent of control (in parentheses) are as follows:19 May 2005 (88)22 September 2005 (85)17 November 2005 (59)26 January 2006 (78)23 February 2006 (83)23 March 2006 (82)20 July 2006 (88)
Data Reference: | Monitoring Data from the Surface Water Ambient Monitoring Program (SWAMP), San Joaquin River Basin - 2007 Data Review
Water Quality Objective/Criterion: | All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. This objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances. (CVRWQCB, 2007)
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
Evaluation Guideline: | Statistically significant difference from control using a Fisher's Exact test with 7-day chronic-style toxicity tests.
Guideline Reference: | Short-term Methods for Estimating the Chronic Toxicity of Effluents and Receiving Waters to Freshwater and Marine Organisms, Fourth Edition. U.S. Environmental Protection Agency Office of Water, Washington, DC EPA-821-R-02-013
Spatial Representation: | Samples were collected from San Joaquin River at Hills Ferry.
Temporal Representation: | Samples were collected from March 2004 - July 2006
Environmental Conditions: |
QAPP Information: | Data quality: Excellent. Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s): | Quality Assurance Management Plan for the State of California's Surface Water Ambient Monitoring Program. Sacramento, CA. State Water Resources Control Board. SWAMP. December 2002 (1st version)
LOE ID: | 4539
Pollutant: | Unknown Toxicity
LOE Subgroup: | Toxicity
Matrix: | Water
Fraction: | Not Recorded
Beneficial Use: | Warm Freshwater Habitat
Number of Samples: | 0
Number of Exceedances: | 0
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | Unspecified--This LOE is a placeholder to support a 303(d) listing decision made prior to 2006.
Data Reference: | Placeholder reference pre-2006 303(d)
Water Quality Objective/Criterion: |
Objective/Criterion Reference:
Evaluation Guideline: |
Guideline Reference:
Spatial Representation: | Unspecified
Temporal Representation: | Unspecified
Environmental Conditions: | Unspecified
QAPP Information: | Unspecified
QAPP Information Reference(s):
LOE ID: | 22680
Pollutant: | Toxicity
LOE Subgroup: | Toxicity
Matrix: | Water
Fraction: | Total
Beneficial Use: | Warm Freshwater Habitat
Aquatic Life Use: | Warm Freshwater Habitat
Number of Samples: | 10
Number of Exceedances: | 0
Data and Information Type: | TOXICITY TESTING
Data Used to Asses Water Quality: | None of the 10 samples tested with Pimephales promelas were toxic and violated the narrative toxicity objective.
Data Reference: | Monitoring Data from the Surface Water Ambient Monitoring Program (SWAMP), San Joaquin River Basin - 2007 Data Review
Water Quality Objective/Criterion: | All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. This objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances. (CVRWQCB, 2007)
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
Evaluation Guideline: | Statistically significant difference from control using a Fisher's Exact test with 4-day acute-style toxicity tests.
Guideline Reference: | Methods for Measuring the Acute Toxicity of Effluents and Receiving Waters to Freshwater and Marine Organisms, Fifth Edition. U.S. Environmental Protection Agency Office of Water, Washington, DC EPA-821-R-02-012
Spatial Representation: | Samples were collected from San Joaquin River at Hills Ferry.
Temporal Representation: | Samples were collected from October 2000 - November 2002
Environmental Conditions: |
QAPP Information: | Data quality: Excellent. Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s): | Quality Assurance Management Plan for the State of California's Surface Water Ambient Monitoring Program. Sacramento, CA. State Water Resources Control Board. SWAMP. December 2002 (1st version)
LOE ID: | 22679
Pollutant: | Toxicity
LOE Subgroup: | Toxicity
Matrix: | Water
Fraction: | Total
Beneficial Use: | Warm Freshwater Habitat
Aquatic Life Use: | Warm Freshwater Habitat
Number of Samples: | 12
Number of Exceedances: | 0
Data and Information Type: | TOXICITY TESTING
Data Used to Asses Water Quality: | None of the 12 samples tested with Ceriodaphnia dubia were toxic and violated the narrative toxicity objective.
Data Reference: | Monitoring Data from the Surface Water Ambient Monitoring Program (SWAMP), San Joaquin River Basin - 2007 Data Review
Water Quality Objective/Criterion: | All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. This objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances. (CVRWQCB, 2007)
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
Evaluation Guideline: | Statistically significant difference from control using a Fisher's Exact test with 6-day acute-style toxicity tests.
Guideline Reference: | Methods for Measuring the Acute Toxicity of Effluents and Receiving Waters to Freshwater and Marine Organisms, Fifth Edition. U.S. Environmental Protection Agency Office of Water, Washington, DC EPA-821-R-02-012
Spatial Representation: | Samples were collected from San Joaquin River at Hills Ferry.
Temporal Representation: | Samples were collected from March 2004 - July 2006
Environmental Conditions: |
QAPP Information: | Data quality: Excellent. Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s): | Quality Assurance Management Plan for the State of California's Surface Water Ambient Monitoring Program. Sacramento, CA. State Water Resources Control Board. SWAMP. December 2002 (1st version)
LOE ID: | 22678
Pollutant: | Toxicity
LOE Subgroup: | Toxicity
Matrix: | Water
Fraction: | Total
Beneficial Use: | Warm Freshwater Habitat
Aquatic Life Use: | Warm Freshwater Habitat
Number of Samples: | 9
Number of Exceedances: | 0
Data and Information Type: | TOXICITY TESTING
Data Used to Asses Water Quality: | None of the 9 samples tested with Ceriodaphnia dubia were toxic and violated the narrative toxicity objective.
Data Reference: | Monitoring Data from the Surface Water Ambient Monitoring Program (SWAMP), San Joaquin River Basin - 2007 Data Review
Water Quality Objective/Criterion: | All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. This objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances. (CVRWQCB, 2007)
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
Evaluation Guideline: | Statistically significant difference from control using a Fisher's Exact test with 48-hour acute-style toxicity tests.
Guideline Reference: | Methods for Measuring the Acute Toxicity of Effluents and Receiving Waters to Freshwater and Marine Organisms, Fifth Edition. U.S. Environmental Protection Agency Office of Water, Washington, DC EPA-821-R-02-012
Spatial Representation: | Samples were collected from San Joaquin River at Hills Ferry.
Temporal Representation: | Samples were collected from October 2001 - September 2002
Environmental Conditions: |
QAPP Information: | Data quality: Excellent. Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s): | Quality Assurance Management Plan for the State of California's Surface Water Ambient Monitoring Program. Sacramento, CA. State Water Resources Control Board. SWAMP. December 2002 (1st version)

DECISION ID | 16091
Pollutant: | Selenium
Final Listing Decision: | Do Not Delist from 303(d) list (being addressed with USEPA approved TMDL)
Last Listing Cycle's Final Listing Decision: | New Decision
Revision Status | Revised
Sources: | Agriculture
TMDL Name: | San Joaquin River Watershed Selenium
TMDL Project Code: | 491
Date TMDL Approved by USEPA: | 03/28/2002
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | This pollutant is being considered for removal on the section 303(d) list under sections 2.2 and 4.1 of the Listing Policy. Under 4.1 of the Policy, a minimum of one line of evidence is needed to assess listing status. One lines of evidence are available in the administrative record to assess this pollutant. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against removing this water segment-pollutant combination from the section 303(d) list. There is sufficient justification to place it in the Being Addressed portion of the 303(d) list because a TMDL has been completed and approved by RWQCB and USEPA, and is expected to result in attainment of the standard.. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1 of the Policy. 3. Ten of 45 samples exceeded the water quality objective and these exceed the allowable frequency listed in Table 4.1 of the Listing Policy. 4. The San Joaquin River Selenium TMDL has been approved by the Central Valley Water Board in 1997 and approved by USEPA on 03/28/2002. 5. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.
RWQCB Board Decision / Staff Recommendation: | After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be removed from the section 303(d) list because applicable water quality standards for the pollutant are being exceeded.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 16091

LOE ID: | 6948
Pollutant: | Selenium
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | Total
Beneficial Use: | Warm Freshwater Habitat
Number of Samples: | 45
Number of Exceedances: | 10
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | 10 of the 45 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation objective for Selenium.
Data Reference: | San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River
Water Quality Objective/Criterion: | Selenium levels for Mud Slough (north), and the San Joaquin River form Sack Dam to the mouth of the Merced River should not exceed 5 ug/L (4-day average), total concentration..
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
Evaluation Guideline: |
Guideline Reference:
Spatial Representation: | Samples were collected at SJR @ Hills Ferry.
Temporal Representation: | The samples were collected from Jan 4 2001 to Sep 20 2007
Environmental Conditions: |
QAPP Information: | Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s):
LOE ID: | 2761
Pollutant: | Selenium
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | Not Recorded
Beneficial Use: | Warm Freshwater Habitat
Aquatic Life Use: | Wildlife Habitat
Number of Samples: |
Number of Exceedances: |
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | Unspecified--This LOE is a placeholder to support a 303(d) listing decision made prior to 2006.
Data Reference: | Placeholder reference 2006 303(d)
Water Quality Objective/Criterion: |
Objective/Criterion Reference:
Evaluation Guideline: |
Guideline Reference:
Spatial Representation: |
Temporal Representation: |
Environmental Conditions: |
QAPP Information: | QA Info Missing
QAPP Information Reference(s):

DECISION ID | 7939
Pollutant: | Ammonia
Final Listing Decision: | Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | New Decision
Revision Status | Revised
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | This pollutant is being considered for listing under sections 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. Data is available from 1 line of evidence for this pollutant. Based on the readily available data and information, the weight of evidence indicates that there is not sufficient justification for placing this water segment-pollution combination on the section 303(d) list. The recommendation is based on staff findings that 0 of 21 available concentrations exceeded the water quality objective and this does not exceed the allowable frequency using Table 3.1 of the Listing Policy. Table 3.1 of the listing policy recommends listing if a sample size of 21 has 2 or more samples that exceed the evaluation criteria. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.
RWQCB Board Decision / Staff Recommendation: | After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be placed on the section 303(d) list because applicable water quality standards are not being exceeded.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 7939

LOE ID: | 6521
Pollutant: | Ammonia
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | None
Beneficial Use: | Warm Freshwater Habitat
Number of Samples: | 21
Number of Exceedances: | 0
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | 0 of the 21 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation guideline for Ammonia.
Data Reference: | San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River
Water Quality Objective/Criterion: | All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. This objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances. (CRWQCB, 2006)
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
Evaluation Guideline: | Ammonia levels should not to exceed the calculated limit. Freshwater Aquatic Life Protection (Salmonid present) Criteria Maximum Concentration (CMC) (1-hour Average (mg N/L)) calculated based on the following formula: CMC = (0.275/(1 + 107.204-pH)) + (39.0/(1 + 10pH-7.204)) which incorporates pH (US EPA, 2005: Appendix C)
Guideline Reference: | Compilation of Water Quality Goals - 2007 for toxicity data
Spatial Representation: | Samples were collected at SJR @ Hills Ferry.
Temporal Representation: | The samples were collected from Mar 31 1994 to Jan 29 2003
Environmental Conditions: |
QAPP Information: | Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s):

DECISION ID | 7940
Pollutant: | Arsenic
Final Listing Decision: | Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | New Decision
Revision Status | Revised
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | This pollutant is being considered for placement on the section 303(d) list under section 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. One line of evidence are available in the administrative record to assess this pollutant. None of the samples exceed the water quality objective. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against placing this water segment-pollutant combination on the section 303(d) list in the Water Quality Limited Segments category. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. None of 16 samples exceeded the USEPA Primary MCL and this does not exceed the allowable frequency listed in Table 3.1 of the Listing Policy. 4. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.
RWQCB Board Decision / Staff Recommendation: | After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be placed on the section 303(d) list because applicable water quality standards are not being exceeded.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 7940

LOE ID: | 6522
Pollutant: | Arsenic
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | Total
Beneficial Use: | Municipal & Domestic Supply
Number of Samples: | 16
Number of Exceedances: | 0
Data and Information Type: | PHYSICAL/CHEMICAL MONITORING
Data Used to Asses Water Quality: | None of the 16 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation objective for Arsenic.
Data Reference: | San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River
Water Quality Objective/Criterion: | Arsenic criteria of 10ug/L (USEPA Primary MCL).
Objective/Criterion Reference: | National Recommended Water Quality Criteria. United States Environmental Protection Agency. Office of Water. Office of Science and Technology. 4304T
Evaluation Guideline: |
Guideline Reference:
Spatial Representation: | Samples were collected at SJR @ Hills Ferry.
Temporal Representation: | The samples were collected from Aug 29 2001 to Jun 26 2003
Environmental Conditions: |
QAPP Information: | Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s):

DECISION ID | 7941
Pollutant: | Cadmium
Final Listing Decision: | Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | New Decision
Revision Status | Revised
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | This pollutant is being considered for listing under sections 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. Data is available from 2 lines of evidence for this pollutant. Based on the readily available data and information, the weight of evidence indicates that there is not sufficient justification for placing this water segment-pollution combination on the section 303(d) list. The recommendation is based on staff findings that 0 of 11 available concentrations exceeded the water quality objective and this does not exceed the allowable frequency using Table 3.1 of the Listing Policy. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.
RWQCB Board Decision / Staff Recommendation: | After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be placed on the section 303(d) list because applicable water quality standards are not being exceeded.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 7941

LOE ID: | 6529
Pollutant: | Cadmium
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | Dissolved
Beneficial Use: | Warm Freshwater Habitat
Number of Samples: | 11
Number of Exceedances: | 0
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | 0 of the 11 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation objective for Cadmium.
Data Reference: | San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River
Water Quality Objective/Criterion: | All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. This objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances. (CRWQCB, 2006) Dissolved Cadmium levels should not exceed the calculated limit based on the formula: Criteria Maximum Concentration (1-hour Average dissolved)=(EXP(1.128*LN(hardness)-3.6867))*(1.136672-(LN(hardness)*0.041838)) (CTR)
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
| Compilation of Water Quality Goals - 2007 for toxicity data
Evaluation Guideline: |
Guideline Reference:
Spatial Representation: | Samples were collected at SJR @ Hills Ferry.
Temporal Representation: | The samples were collected from Sep 26 2001 to Nov 20 2002
Environmental Conditions: |
QAPP Information: | Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s):

DECISION ID | 9253
Pollutant: | Copper
Final Listing Decision: | Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | New Decision
Revision Status | Revised
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | This pollutant is being considered for listing under sections 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. Data is available from 1 line of evidence for this pollutant. Based on the readily available data and information, the weight of evidence indicates that there is not sufficient justification for placing this water segment-pollution combination on the section 303(d) list. The recommendation is based on staff findings that 0 of 50 available concentrations exceeded the water quality objective and this does exceed the allowable frequency using Table 3.1 of the Listing Policy. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.
RWQCB Board Decision / Staff Recommendation: | After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be placed on the section 303(d) list because applicable water quality standards are not being exceeded.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 9253

LOE ID: | 6532
Pollutant: | Copper
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | Dissolved
Beneficial Use: | Warm Freshwater Habitat
Number of Samples: | 50
Number of Exceedances: | 0
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | 0 of the 50 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation objective for Copper.
Data Reference: | San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River
Water Quality Objective/Criterion: | All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. This objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances. (CRWQCB, 2006) Dissolved Copper levels should not exceed calculated limit based on the formula: Criteria Maximum Concentration (1-hour Average, dissolved)=(EXP(0.9422*LN(hardness)-1.7))*(0.96) (CTR)
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
| Compilation of Water Quality Goals - 2007 for toxicity data
Evaluation Guideline: |
Guideline Reference:
Spatial Representation: | Samples were collected at SJR @ Hills Ferry.
Temporal Representation: | The samples were collected from Oct 29 1992 to Nov 20 2002
Environmental Conditions: |
QAPP Information: | Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s):

DECISION ID | 7942
Pollutant: | Lead
Final Listing Decision: | Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | New Decision
Revision Status | Revised
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | This pollutant is being considered for listing under sections 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. Data is available from 1 line of evidence for this pollutant. Based on the readily available data and information, the weight of evidence indicates that there is not sufficient justification for placing this water segment-pollution combination on the section 303(d) list. The recommendation is based on staff findings that 0 of 51 available concentrations exceeded the water quality objective and this does not exceed the allowable frequency using Table 3.1 of the Listing Policy. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.
RWQCB Board Decision / Staff Recommendation: | After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be placed on the section 303(d) list because applicable water quality standards are not being exceeded.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 7942

LOE ID: | 6535
Pollutant: | Lead
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | Dissolved
Beneficial Use: | Warm Freshwater Habitat
Number of Samples: | 51
Number of Exceedances: | 0
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | 0 of the 51 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation objective for Lead.
Data Reference: | San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River
Water Quality Objective/Criterion: | All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. This objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances. (CRWQCB, 2006) Dissolved Lead levels should not exceed the calculated value based on the formula: Criteria Maximum Concentration (1-hour Average, dissolved)=(EXP(1.273*LN(hardness)-1.46))*(1.46203-(LN(hardness)*0.145712)) (CTR)
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
| Compilation of Water Quality Goals - 2007 for toxicity data
Evaluation Guideline: |
Guideline Reference:
Spatial Representation: | Samples were collected at SJR @ Hills Ferry.
Temporal Representation: | The samples were collected from Oct 29 1992 to Nov 20 2002
Environmental Conditions: |
QAPP Information: | Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s):

DECISION ID | 7943
Pollutant: | Molybdenum
Final Listing Decision: | Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | New Decision
Revision Status | Revised
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | This pollutant is being considered for listing under sections 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. Data is available from X line of evidence for this pollutant. Based on the readily available data and information, the weight of evidence indicates that there is not sufficient justification for placing this water segment-pollution combination on the section 303(d) list. The recommendation is based on staff findings that 0 of 59 available concentrations exceeded the water quality objective and this does not exceed the allowable frequency using Table 3.1 of the Listing Policy. Table 3.1 of the listing policy recommends listing if a sample size of 59 has 5 or more samples that exceed the evaluation criteria. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.
RWQCB Board Decision / Staff Recommendation: | After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be placed on the section 303(d) list because applicable water quality standards are not being exceeded.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 7943

LOE ID: | 6541
Pollutant: | Molybdenum
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | Total
Beneficial Use: | Warm Freshwater Habitat
Number of Samples: | 59
Number of Exceedances: | 0
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | 0 of the 59 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation objective for Molybdenum.
Data Reference: | San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River
Water Quality Objective/Criterion: | All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. This objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances. (CRWQCB, 2006) Molybdenum levels should not to exceed 50 ug/L (Basin Plan Objective)
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
| Compilation of Water Quality Goals - 2007 for toxicity data
Evaluation Guideline: |
Guideline Reference:
Spatial Representation: | Samples were collected at SJR @ Hills Ferry.
Temporal Representation: | The samples were collected from Oct 25 1995 to Nov 16 2006
Environmental Conditions: |
QAPP Information: | Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s):

DECISION ID | 7944
Pollutant: | Nickel
Final Listing Decision: | Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | New Decision
Revision Status | Revised
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | This pollutant is being considered for listing under sections 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. Data is available from 1 line of evidence for this pollutant. Based on the readily available data and information, the weight of evidence indicates that there is not sufficient justification for placing this water segment-pollution combination on the section 303(d) list. The recommendation is based on staff findings that 0 of 51 available concentrations exceeded the water quality objective and this does not exceed the allowable frequency using Table 3.1 of the Listing Policy. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.
RWQCB Board Decision / Staff Recommendation: | After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be placed on the section 303(d) list because applicable water quality standards are not being exceeded.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 7944

LOE ID: | 6544
Pollutant: | Nickel
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | Dissolved
Beneficial Use: | Warm Freshwater Habitat
Number of Samples: | 51
Number of Exceedances: | 0
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | 0 of the 51 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation objective for Nickel.
Data Reference: | San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River
Water Quality Objective/Criterion: | All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. This objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances. (CRWQCB, 2006) Dissolved Nickel levels should not exceed the calculated limit based on the formula: Criteria Maximum Concentration (1-hour Average, dissolved)=(EXP(0.846*LN(hardness)+2.255))*(0.998)(CTR)
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
| Compilation of Water Quality Goals - 2007 for toxicity data
Evaluation Guideline: |
Guideline Reference:
Spatial Representation: | Samples were collected at SJR @ Hills Ferry.
Temporal Representation: | The samples were collected from Oct 29 1992 to Nov 20 2002
Environmental Conditions: |
QAPP Information: | Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s):

DECISION ID | 7945
Pollutant: | Nitrate as Nitrate (NO3)
Final Listing Decision: | Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | New Decision
Revision Status | Revised
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | This pollutant is being considered for listing under sections 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. Data is available from 1 line of evidence for this pollutant. Based on the readily available data and information, the weight of evidence indicates that there is not sufficient justification for placing this water segment-pollution combination on the section 303(d) list. The recommendation is based on staff findings that 0 of 22 available concentrations exceeded the water quality objective and this does not exceed the allowable frequency using Table 3.1 of the Listing Policy. Table 3.1 of the listing policy recommends listing if a sample size of 22 has 2 or more samples that exceed the evaluation criteria. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.
RWQCB Board Decision / Staff Recommendation: | After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be placed on the section 303(d) list because applicable water quality standards are not being exceeded.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 7945

LOE ID: | 6545
Pollutant: | Nitrate as Nitrate (NO3)
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | None
Beneficial Use: | Warm Freshwater Habitat
Number of Samples: | 22
Number of Exceedances: | 0
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | 0 of the 22 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation guideline for Nitrate-N.
Data Reference: | San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River
Water Quality Objective/Criterion: | All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. This objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances. (CRWQCB, 2006)
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
Evaluation Guideline: | Nitrate-N levels should not to exceed 100 mg/L (USEPA National Ambient Water Quality Objective)
Guideline Reference: | National Recommended Water Quality Criteria. United States Environmental Protection Agency. Office of Water. Office of Science and Technology. 4304T
Spatial Representation: | Samples were collected at SJR @ Hills Ferry.
Temporal Representation: | The samples were collected from Jul 27 1994 to Dec 18 2002
Environmental Conditions: |
QAPP Information: | Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s):

DECISION ID | 14021
Pollutant: | Oxygen, Dissolved
Final Listing Decision: | Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | New Decision
Revision Status | Revised
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | This pollutant is being considered for placement on the section 303(d) list under section 3.2 of the Listing Policy. Under section 3.2 a single line of evidence is necessary to assess listing status. One lines of evidence are available in the administrative record to assess this pollutant. Five of the samples exceed the water quality objective. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against placing this water segment-pollutant combination on the section 303(d) list in the Water Quality Limited Segments category. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. Five of 76 samples fell below the minimum criterion water quality objective listed in the Sacramento/San Joaquin River Basin Plan and this does not exceed the allowable frequency listed in Table 3.2 of the Listing Policy. 4. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.
RWQCB Board Decision / Staff Recommendation: | After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be placed on the section 303(d) list because applicable water quality standards are not being exceeded.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 14021

LOE ID: | 23297
Pollutant: | Oxygen, Dissolved
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | Dissolved
Beneficial Use: | Cold Freshwater Habitat
Aquatic Life Use: | Cold Freshwater Habitat
Number of Samples: | 76
Number of Exceedances: | 5
Data and Information Type: | PHYSICAL/CHEMICAL MONITORING
Data Used to Asses Water Quality: | Seventy-six samples were taken from the San Joaquin River between 2001 and 2006. Five of the seventy-six samples fell below the Water Quality Objective for minimum dissolved oxygen content in surface water.
Data Reference: | Monitoring Data from the Surface Water Ambient Monitoring Program (SWAMP), San Joaquin River Basin - 2007 Data Review
Water Quality Objective/Criterion: | From the Sacramento/San Joaquin River Basin Plan the (COLD) Cold Freshwater Habitat criterion is a Minimum Dissolved Oxygen content of 7mg/L.
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
Evaluation Guideline: |
Guideline Reference:
Spatial Representation: | Samples were collected from the San Joaquin River at Hill Ferry in Stanislaus County.
Temporal Representation: | Samples were collected between June 2001 and March 2006. Samples were collected at bi-monthly and monthly intervals.
Environmental Conditions: |
QAPP Information: | Data quality: Good. Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s): | Quality Assurance Management Plan for the State of California's Surface Water Ambient Monitoring Program. Sacramento, CA. State Water Resources Control Board. SWAMP. December 2002 (1st version)

DECISION ID | 9254
Pollutant: | Zinc
Final Listing Decision: | Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | New Decision
Revision Status | Revised
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | This pollutant is being considered for listing under sections 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. Data is available from 1 line of evidence for this pollutant. Based on the readily available data and information, the weight of evidence indicates that there is not sufficient justification for placing this water segment-pollution combination on the section 303(d) list. The recommendation is based on staff findings that 1 of 47 available concentrations exceeded the water quality objective and this does exceed the allowable frequency using Table 3.1 of the Listing Policy. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.
RWQCB Board Decision / Staff Recommendation: | After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be placed on the section 303(d) list because applicable water quality standards are not being exceeded.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 9254

LOE ID: | 6547
Pollutant: | Zinc
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | Dissolved
Beneficial Use: | Warm Freshwater Habitat
Number of Samples: | 47
Number of Exceedances: | 1
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | 1 of the 47 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation objective for Zinc. The exceeded results are as follows: 4/26/1995 - a sample taken at SJR @ Hill's Ferry had a result of 230ug/L.
Data Reference: | San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River
Water Quality Objective/Criterion: | All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. This objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances. (CRWQCB, 2006) Dissolved Zinc levels should not exceed the calculated limit based on the formula: Criteria Maximum Concentration=EXP((0.8473*LN(hardness))+0.884)*(0.978) (CTR)
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
| Compilation of Water Quality Goals - 2007 for toxicity data
Evaluation Guideline: |
Guideline Reference:
Spatial Representation: | Samples were collected at SJR @ Hills Ferry.
Temporal Representation: | The samples were collected from Oct 29 1992 to Nov 20 2002
Environmental Conditions: |
QAPP Information: | Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s):

DECISION ID | 14023
Pollutant: | pH
Final Listing Decision: | Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | New Decision
Revision Status | Revised
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | This pollutant is being considered for placement on the section 303(d) list under section 3.2 of the Listing Policy. Under section 3.2 a single line of evidence is necessary to assess listing status. One lines of evidence are available in the administrative record to assess this pollutant. Two of the samples exceed the water quality objective. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against placing this water segment-pollutant combination on the section 303(d) list in the Water Quality Limited Segments category. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. Two of 292 samples exceeded the pH objective and this does not exceed the allowable frequency listed in Table 3.2 of the Listing Policy. 4. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.
RWQCB Board Decision / Staff Recommendation: | After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be placed on the section 303(d) list because applicable water quality standards are not being exceeded.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 14023

LOE ID: | 23299
Pollutant: | pH
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | None
Beneficial Use: | Warm Freshwater Habitat
Aquatic Life Use: | Warm Freshwater Habitat
Number of Samples: | 292
Number of Exceedances: | 2
Data and Information Type: | PHYSICAL/CHEMICAL MONITORING
Data Used to Asses Water Quality: | The Central Valley Regional Water Quality Control Board Surface Water Ambient Monitoring Program collected 292 samples from October 1995 to March 2006. Two out of 292 samples were outside the acceptable range; one sample was higher than the acceptable range and one sample was lower than the acceptable range.
Data Reference: | Monitoring Data from the Surface Water Ambient Monitoring Program (SWAMP), San Joaquin River Basin - 2007 Data Review
Water Quality Objective/Criterion: | The pH of water shall not be depressed below 6.5,raised above 8.5, or changed at any time more than 0.5 units from normal ambient pH.
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
Evaluation Guideline: | Measurement of pH within the range of 6.5 and 8.5
Guideline Reference:
Spatial Representation: | Samples were collected from San Joaquin River at Hills Ferry.
Temporal Representation: | Sampling occurred from October 1995 to March 2006.
Environmental Conditions: |
QAPP Information: | Data quality: Good. Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s): | Quality Assurance Management Plan for the State of California's Surface Water Ambient Monitoring Program. Sacramento, CA. State Water Resources Control Board. SWAMP. December 2002 (1st version)

DECISION ID | 13209
Pollutant: | Escherichia coli (E. Coli)
Final Listing Decision: | List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | New Decision
Revision Status | Revised
Sources: | Source Unknown
Expected TMDL Completion Date: | 2022
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | This pollutant is being considered for placement on the section 303(d) list under section 3.2 of the Listing Policy. Under section 3.2 a single line of evidence is necessary to assess listing status. One lines of evidence are available in the administrative record to assess this pollutant. Eleven of the samples exceed the water quality objective. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification in favor of placing this water segment-pollutant combination on the section 303(d) list in the Water Quality Limited Segments category. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. Eleven of 32 samples exceed the E. Coli objective and this exceeds the allowable frequency listed in Table 3.2 of the Listing Policy. 4. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.
RWQCB Board Decision / Staff Recommendation: | After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should be placed on the section 303(d) list because applicable water quality standards are exceeded and a pollutant contributes to or causes the problem.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 13209

LOE ID: | 23298
Pollutant: | Escherichia coli (E. Coli)
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | None
Beneficial Use: | Water Contact Recreation
Number of Samples: | 32
Number of Exceedances: | 11
Data and Information Type: | PHYSICAL/CHEMICAL MONITORING
Data Used to Asses Water Quality: | The Central Valley Regional Water Quality Control Board Surface Water Ambient Monitoring Program collected 32 samples from July 2002 to March 2006. Eleven out of the 32 samples exceeded the evaluation objective.
Data Reference: | Monitoring Data from the Surface Water Ambient Monitoring Program (SWAMP), San Joaquin River Basin - 2007 Data Review
Water Quality Objective/Criterion: | All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. The objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances.
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
| Ambient Water Quality Criteria for Bacteria - 1986. EPA440/5-84-002
Evaluation Guideline: | The USEPA E. Coli objective of 235/100 mL in any single sample (USEPA 1986).
Guideline Reference: | Ambient Water Quality Criteria for Bacteria - 1986. EPA440/5-84-002
Spatial Representation: | Samples were collected at San Joaquin River at Hills Ferry.
Temporal Representation: | Sampling occurred from July 2002 to March 2006.
Environmental Conditions: |
QAPP Information: | Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s): | Quality Assurance Management Plan for the State of California's Surface Water Ambient Monitoring Program. Sacramento, CA. State Water Resources Control Board. SWAMP. December 2002 (1st version)

DECISION ID | 6958
Pollutant: | Boron
Final Listing Decision: | List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | List on 303(d) list (TMDL required list)(2006)
Revision Status | Original
Sources: | Agriculture
Expected TMDL Completion Date: | 2019
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | 303(d) listing decisions made prior to 2006 were not held in an assessment database. The Regional Boards will update this decision when new data and information become available and are assessed.
RWQCB Board Decision / Staff Recommendation: | No new data were assessed for 2008. The decision has not changed.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 6958

LOE ID: | 4534
Pollutant: | Boron
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | Not Recorded
Beneficial Use: | Agricultural Supply
Number of Samples: | 0
Number of Exceedances: | 0
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | Unspecified--This LOE is a placeholder to support a 303(d) listing decision made prior to 2006.
Data Reference: | Placeholder reference pre-2006 303(d)
Water Quality Objective/Criterion: | Unspecified
Objective/Criterion Reference: | Placeholder reference pre-2006 303(d)
Evaluation Guideline: | Unspecified
Guideline Reference: | Placeholder reference pre-2006 303(d)
Spatial Representation: | Unspecified
Temporal Representation: | Unspecified
Environmental Conditions: | Unspecified
QAPP Information: | Unspecified
QAPP Information Reference(s):

DECISION ID | 6959
Pollutant: | DDT
Final Listing Decision: | List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | List on 303(d) list (TMDL required list)(2006)
Revision Status | Original
Sources: | Agriculture
Expected TMDL Completion Date: | 2011
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | 303(d) listing decisions made prior to 2006 were not held in an assessment database. The Regional Boards will update this decision when new data and information become available and are assessed.
RWQCB Board Decision / Staff Recommendation: | No new data were assessed for 2008. The Regional Board will update this decision when new data and information become available and are assessed.
SWRCB Board Decision / Staff Recommendation: | N/A
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 6959

LOE ID: | 4535
Pollutant: | DDT
LOE Subgroup: | Pollutant-Tissue
Matrix: | Tissue
Fraction: | Not Recorded
Beneficial Use: | Commercial or recreational collection of fish, shellfish, or organisms
Number of Samples: | 0
Number of Exceedances: | 0
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | Unspecified--This LOE is a placeholder to support a 303(d) listing decision made prior to 2006.
Data Reference: | Placeholder reference pre-2006 303(d)
Water Quality Objective/Criterion: | Unspecified
Objective/Criterion Reference: | Placeholder reference pre-2006 303(d)
Evaluation Guideline: | Unspecified
Guideline Reference: | Placeholder reference pre-2006 303(d)
Spatial Representation: | Unspecified
Temporal Representation: | Unspecified
Environmental Conditions: | Unspecified
QAPP Information: | Unspecified
QAPP Information Reference(s):

DECISION ID | 6960
Pollutant: | Electrical Conductivity
Final Listing Decision: | List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | List on 303(d) list (TMDL required list)(2006)
Revision Status | Original
Sources: | Agriculture
Expected TMDL Completion Date: | 2019
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | 303(d) listing decisions made prior to 2006 were not held in an assessment database. The Regional Boards will update this decision when new data and information become available and are assessed.
RWQCB Board Decision / Staff Recommendation: | No new data were assessed for 2008. The decision has not changed.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 6960

LOE ID: | 4536
Pollutant: | Electrical Conductivity
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | Not Recorded
Beneficial Use: | Agricultural Supply
Number of Samples: | 0
Number of Exceedances: | 0
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | Unspecified--This LOE is a placeholder to support a 303(d) listing decision made prior to 2006.
Data Reference: | Placeholder reference pre-2006 303(d)
Water Quality Objective/Criterion: | Unspecified
Objective/Criterion Reference: | Placeholder reference pre-2006 303(d)
Evaluation Guideline: | Unspecified
Guideline Reference: | Placeholder reference pre-2006 303(d)
Spatial Representation: | Unspecified
Temporal Representation: | Unspecified
Environmental Conditions: | Unspecified
QAPP Information: | Unspecified
QAPP Information Reference(s):

DECISION ID | 6961
Pollutant: | Group A Pesticides
Final Listing Decision: | List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | List on 303(d) list (TMDL required list)(2006)
Revision Status | Original
Sources: | Agriculture
Expected TMDL Completion Date: | 2011
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | 303(d) listing decisions made prior to 2006 were not held in an assessment database. The Regional Boards will update this decision when new data and information become available and are assessed.
RWQCB Board Decision / Staff Recommendation: | No new data were assessed for 2008. The decision has not changed.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 6961

LOE ID: | 4537
Pollutant: | Group A Pesticides
LOE Subgroup: | Pollutant-Tissue
Matrix: | Tissue
Fraction: | Not Recorded
Beneficial Use: | Commercial or recreational collection of fish, shellfish, or organisms
Number of Samples: | 0
Number of Exceedances: | 0
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | Unspecified--This LOE is a placeholder to support a 303(d) listing decision made prior to 2006.
Data Reference: | Placeholder reference pre-2006 303(d)
Water Quality Objective/Criterion: | Unspecified
Objective/Criterion Reference: | Placeholder reference pre-2006 303(d)
Evaluation Guideline: | Unspecified
Guideline Reference: | Placeholder reference pre-2006 303(d)
Spatial Representation: | Unspecified
Temporal Representation: | Unspecified
Environmental Conditions: | Unspecified
QAPP Information: | Unspecified
QAPP Information Reference(s):

DECISION ID | 6962
Pollutant: | Mercury
Final Listing Decision: | List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision: | List on 303(d) list (TMDL required list)(2006)
Revision Status | Original
Sources: | Resource Extraction
Expected TMDL Completion Date: | 2012
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | 303(d) listing decisions made prior to 2006 were not held in an assessment database. The Regional Boards will update this decision when new data and information become available and are assessed.
RWQCB Board Decision / Staff Recommendation: | No new data were assessed for 2008. The decision has not changed.
SWRCB Board Decision / Staff Recommendation: |
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 6962

LOE ID: | 6539
Pollutant: | Mercury
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | Dissolved
Beneficial Use: | Warm Freshwater Habitat
Number of Samples: | 11
Number of Exceedances: | 0
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | 0 of the 11 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation objective for Mercury.
Data Reference: | San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River
Water Quality Objective/Criterion: | All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. This objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances. (CRWQCB, 2006) Dissolved Mercury levels should not to exceed 1.4 ug/L (CTR)
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
| Compilation of Water Quality Goals - 2007 for toxicity data
Evaluation Guideline: |
Guideline Reference:
Spatial Representation: | Samples were collected at SJR @ Hills Ferry.
Temporal Representation: | The samples were collected from Sep 26 2001 to Nov 20 2002
Environmental Conditions: |
QAPP Information: | Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s):
LOE ID: | 6537
Pollutant: | Mercury
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | Total
Beneficial Use: | Warm Freshwater Habitat
Number of Samples: | 34
Number of Exceedances: | 0
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | 0 of the 34 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation objective for Mercury.
Data Reference: | San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River
Water Quality Objective/Criterion: | All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. This objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances. (CRWQCB, 2006) Total Mercury levels should not to exceed 2.1 ug/L (CTR)
Objective/Criterion Reference: | Central Valley Regional Water Quality Control Board. Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board - Central Valley Region
| Compilation of Water Quality Goals - 2007 for toxicity data
Evaluation Guideline: |
Guideline Reference:
Spatial Representation: | Samples were collected at SJR @ Hills Ferry.
Temporal Representation: | The samples were collected from Dec 18 1985 to May 29 2003
Environmental Conditions: |
QAPP Information: | Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.
QAPP Information Reference(s):
LOE ID: | 4538
Pollutant: | Mercury
LOE Subgroup: | Pollutant-Tissue
Matrix: | Tissue
Fraction: | Not Recorded
Beneficial Use: | Commercial or recreational collection of fish, shellfish, or organisms
Number of Samples: | 0
Number of Exceedances: | 0
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | Unspecified--This LOE is a placeholder to support a 303(d) listing decision made prior to 2006.
Data Reference: | Placeholder reference pre-2006 303(d)
Water Quality Objective/Criterion: | Unspecified
Objective/Criterion Reference: | Placeholder reference pre-2006 303(d)
Evaluation Guideline: | Unspecified
Guideline Reference: | Placeholder reference pre-2006 303(d)
Spatial Representation: | Unspecified
Temporal Representation: | Unspecified
Environmental Conditions: | Unspecified
QAPP Information: | Unspecified
QAPP Information Reference(s):

DECISION ID | 6576
Pollutant: | Chlorpyrifos
Final Listing Decision: | List on 303(d) list (being addressed by USEPA approved TMDL)
Last Listing Cycle's Final Listing Decision: | List on 303(d) list (being addressed by USEPA approved TMDL)(2006)
Revision Status | Original
Sources: | Agriculture
TMDL Name: | San Joaquin River Diazinon and Chlorpyrifos
TMDL Project Code: | 209
Date TMDL Approved by USEPA: | 01/01/2007
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | This pollutant is being considered for listing under section 2.2 of the Listing Policy. Under this section of the Policy, a minimum of one line of evidence is needed to assess listing status. The San Joaquin River Diazinon and Chlorpyrifos TMDL was approved by the RWQCB in 2007 and subsequently approved by USEPA in 2007. Based on the readily available information, the weight of evidence indicates that there is sufficient justification in favor of placing this water segment-pollutant combination in the Water Quality Limited Segments Being Addressed portion of the section 303(d) list.
RWQCB Board Decision / Staff Recommendation: | No new data were assessed for 2008. The Regional Board will update this decision when new data and information become available and are assessed.
SWRCB Board Decision / Staff Recommendation: | This is a decision made by the State Water Resources Control Board and approved by the USEPA in 2006 . No new data were assessed by the Regional Board for 2008. The decision has not changed.
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 6576

LOE ID: | 2762
Pollutant: | Chlorpyrifos
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | Not Recorded
Beneficial Use: | Warm Freshwater Habitat
Aquatic Life Use: | Wildlife Habitat
Number of Samples: | 0
Number of Exceedances: | 0
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | Unspecified--This LOE is a placeholder to support a 303(d) listing decision made prior to 2006.
Data Reference: | Placeholder reference 2006 303(d)
Water Quality Objective/Criterion: |
Objective/Criterion Reference:
Evaluation Guideline: |
Guideline Reference:
Spatial Representation: |
Temporal Representation: |
Environmental Conditions: |
QAPP Information: | QA Info Missing
QAPP Information Reference(s):

DECISION ID | 6186
Pollutant: | Diazinon
Final Listing Decision: | List on 303(d) list (being addressed by USEPA approved TMDL)
Last Listing Cycle's Final Listing Decision: | List on 303(d) list (being addressed by USEPA approved TMDL)(2006)
Revision Status | Original
Sources: | Agriculture
TMDL Name: | San Joaquin River Diazinon and Chlorpyrifos
TMDL Project Code: | 209
Date TMDL Approved by USEPA: | 01/01/2007
Impairment from Pollutant or Pollution: | Pollutant
Weight of Evidence: | This pollutant is being considered for listing under section 2.2 of the Listing Policy. Under this section of the Policy, a minimum of one line of evidence is needed to assess listing status. One line of evidence is available in the administrative record to assess this pollutant. The San Joaquin River Diazinon and Chlorpyrifos TMDL was approved by EPA in 2007. Based on the readily available information, the weight of evidence indicates that there is sufficient justification in favor of placing this water segment-pollutant combination in the Water Quality Limited Segments Being Addressed portion of the section 303(d) list.
RWQCB Board Decision / Staff Recommendation: | No new data were assessed for 2008. The Regional Board will update this decision when new data and information become available and are assessed.
SWRCB Board Decision / Staff Recommendation: | This is a decision made by the State Water Resources Control Board and approved by the USEPA in 2006 . No new data were assessed by the Regional Board for 2008. The decision has not changed.
USEPA Decision: |

Lines of Evidence (LOEs) for Decision ID 6186

LOE ID: | 2763
Pollutant: | Diazinon
LOE Subgroup: | Pollutant-Water
Matrix: | Water
Fraction: | Not Recorded
Beneficial Use: | Warm Freshwater Habitat
Aquatic Life Use: | Wildlife Habitat
Number of Samples: | 0
Number of Exceedances: | 0
Data and Information Type: | Not Specified
Data Used to Asses Water Quality: | Unspecified--This LOE is a placeholder to support a 303(d) listing decision made prior to 2006.
Data Reference: | Placeholder reference 2006 303(d)
Water Quality Objective/Criterion: |
Objective/Criterion Reference:
Evaluation Guideline: |
Guideline Reference:
Spatial Representation: |
Temporal Representation: |
Environmental Conditions: |
QAPP Information: | QA Info Missing
QAPP Information Reference(s):