Final California 2018 Integrated Report (303(d) List/305(b) Report)

Water Quality Assessment Data for the 2018 solicitation cycle submitted through CEDEN for TMDL San Joaquin River Organophosphates

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

Objective/Criterion Reference:

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Temporal Representation:

Environmental Conditions:

QAPP Information:

QA Info Missing

QAPP Information Reference(s):


DECISION ID	90608	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Diazinon
Final Listing Decision:	Delist from 303(d) list (being addressed by USEPA approved TMDL)
Last Listing Cycle's Final Listing Decision:	Do Not Delist from 303(d) list (being addressed with USEPA approved TMDL)(2016)
Revision Status	Revised
Reason for Delisting:	Applicable WQS attained; reason for recovery unspecified
TMDL Name:	San Joaquin River Diazinon and Chlorpyrifos
TMDL Project Code:	209
Date TMDL Approved by USEPA:	01/01/2007
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for removal from the CWA section 303(d) List under section 4.1 of the Listing Policy. Under this section a single line of evidence is necessary to assess listing status. Three lines of evidence are available in the administrative record to assess this pollutant. Zero of the 47 samples exceeded the evaluation guideline for WARM. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification for removing this water segment-pollutant combination from the CWA section 303(d) List. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. Zero of the 47 samples exceeded the evaluation guideline for WARM and this does not exceed the allowable frequency listed in Table 4.1 of the Listing Policy. 4. Pursuant to section 4.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should be removed from the section 303(d) list because applicable water quality standards for the pollutant are not being exceeded.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:

Line of Evidence (LOE) for Decision ID 90608, Diazinon	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

130475

Pollutant:

Diazinon

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Total

Beneficial Use:

Warm Freshwater Habitat

Number of Samples:

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

Data Reference:

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

Water Quality Control Plan, Central Valley Region Sacramento River Basin and San Joaquin River Basin: No individual pesticide or combination of pesticides shall be present in concentrations that adversely affect beneficial uses.

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

The freshwater chronic value for diazinon is 0.1 ug/L, expressed as a continuous concentration (Finlayson, 2004).

Guideline Reference:

Water quality for diazinon. Memorandum to J. Karkoski, Central Valley RWQCB. Rancho Cordova, CA: Pesticide Investigation Unit, CA Department of Fish and Game

Spatial Representation:

The samples were collected at 1 monitoring site(s) (541STC510)

Temporal Representation:

The samples were collected between the dates of 2010-10-21 and 2015-09-08

Environmental Conditions:

QAPP Information:

Quality Assurance Project Plan for Monitoring by the East San Joaquin Water Quality Coalition

QAPP Information Reference(s):

Quality Assurance Project Plan for Monitoring by the East San Joaquin Water Quality Coalition

Line of Evidence (LOE) for Decision ID 90608, Diazinon	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

22755

Pollutant:

Diazinon

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Total

Beneficial Use:

Warm Freshwater Habitat

Aquatic Life Use:

Warm Freshwater Habitat

Number of Samples:

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

20 Water samples were collected from San Joaquin River from April through August 2001, representing 20 4-day average concentrations and 20 1-hour average concentrations.0 of 20 available 4-day average concentrations exceeded the 4-day maximum concentration guideline of 0.1 ug/L. 0 of 20 available 1-hour average concentrations exceeded the maximum 1-hour concentration of 0.16 ug/L.

Data Reference:

Surface Water database (SWDB) for Central Valley waterbodies, 2000-2005

Correspondence between the Department of Pesticide Regulation and Central Valley Regional Water Quality Control Board regarding water quality data for waterbodies in the Central Valley

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Objective/Criterion Reference:

Water quality criteria for diazinon and chlorpyrifos. Administrative Report 00-3. Rancho Cordova, CA: Pesticide Investigations Unit, Office of Spills and Response. CA Department of Fish and Game

Evaluation Guideline:

California Fish and Game Hazard Assessment Criteria - 0.160 ug/L 1-hour average and 0.100 ug/L 4-day average concentration not to be exceeded more than once every three years (Siepmann and Finlayson, 2000 and Finlayson, 2004).

Guideline Reference:

Water quality criteria for diazinon and chlorpyrifos. Administrative Report 00-3. Rancho Cordova, CA: Pesticide Investigations Unit, Office of Spills and Response. CA Department of Fish and Game

Spatial Representation:

Samples were collected from San Joaquin River at Maze Blvd.

Temporal Representation:

Samples were collected at weekly from April through August 2001.

Environmental Conditions:

QAPP Information:

QAPP Information Reference(s):

Standard Operating Procedure for Conducting Surface Water Monitoring for Pesticides

Line of Evidence (LOE) for Decision ID 90608, Diazinon	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

2739

Pollutant:

Diazinon

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Not Recorded

Beneficial Use:

Warm Freshwater Habitat

Aquatic Life Use:

Wildlife Habitat

Number of Samples:

Number of Exceedances:

Data and Information Type:

Not Specified

Data Used to Assess Water Quality:

Unspecified--This LOE is a placeholder to support a 303(d) listing decision made prior to 2006.

Data Reference:

Monitoring Data from the Surface Water Ambient Monitoring Program (SWAMP), San Joaquin River Basin - 2007 Data Review

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

Objective/Criterion Reference:

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Temporal Representation:

Environmental Conditions:

QAPP Information:

QA Info Missing

QAPP Information Reference(s):


DECISION ID	73580	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Boron
Final Listing Decision:	Delist from 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Delist from 303(d) list (TMDL required list)(2016)
Revision Status	Original
Reason for Delisting:	Applicable WQS attained; reason for recovery unspecified
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for placement on the CWA section 303(d) List under section 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. Two lines of evidence are available in the administrative record to assess this pollutant. Three of the 177 samples exceed the water quality objective. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against placing this water segment-pollutant combination on the CWA section 303(d) List in the Water Quality Limited Segments category. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. Three of 177 samples exceeded the objective and this does not exceed the allowable frequency listed in Table 3.1 of the Listing Policy. 4. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be placed on the section 303(d) list because applicable water quality standards are not being exceeded.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 73580, Boron	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

22640

Pollutant:

Boron

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Total

Beneficial Use:

Agricultural Supply

Number of Samples:

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

From 15 March to 15 September, 3 out of 73 total samples exceeded the monthly mean objective and 0 out of 263 total samples exceeded the single sample maximum objective. From 16 September to 14 March, 4 out of 75 total samples exceeded the monthly mean objective and 0 out of 267 total samples exceeded the single sample maximum objective. The objective specific to critical years was not used because none of the 11 years were critically dry.

Data Reference:

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

For the San Joaquin River from the mouth of the Merced River to Vernalis (including at Maze Blvd), from 15 March to 15 September, the Boron water quality objective is 2.0 mg/L (max.) and 0.8 mg/L (monthly mean); from 16 September to 14 March the water quality objective is 2.6 mg/L (max.), 1.0 mg/L (monthly mean), except during Critical Years when the water quality objective is 1.3 mg/L (monthly mean) according to the CVRWQCB Basin Plan (2007a, Table III-1, p. III-3.00).

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

Guideline Reference:

Water Quality for Agriculture, Food and Agriculture Organization of the United Nations - Irrigation and Drainage Paper No. 29, Rev 1, Rome (1985)

Spatial Representation:

Samples were collected from San Joaquin River at Maze Blvd.

Temporal Representation:

Samples were collected approximately weekly between March 1996 and March 2006.

Environmental Conditions:

QAPP Information:

Data quality: Good. Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.

QAPP Information Reference(s):

Quality Assurance Management Plan for the State of California's Surface Water Ambient Monitoring Program. Sacramento, CA. State Water Resources Control Board. SWAMP. December 2002 (1st version)

Line of Evidence (LOE) for Decision ID 73580, Boron	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

2742

Pollutant:

Boron

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

None

Beneficial Use:

Agricultural Supply

Number of Samples:

Number of Exceedances:

Data and Information Type:

Not Specified

Data Used to Assess Water Quality:

Unspecified--This LOE is a placeholder to support a 303(d) listing decision made prior to 2006.

Data Reference:

RWB5S Grasslands Bypass FY0708 FY0809

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

Objective/Criterion Reference:

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Temporal Representation:

Environmental Conditions:

QAPP Information:

QA Info Missing

QAPP Information Reference(s):

Line of Evidence (LOE) for Decision ID 73580, Boron	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

59544

Pollutant:

Boron

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Total

Beneficial Use:

Agricultural Supply

Number of Samples:

104

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

Zero of the 104 samples collected exceededed one or both of the temporal-spatial specific objectives.

Data Reference:

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

Table III-1 of the Sacramento / San Joaquin basin plan specifies seasonal objectives for trace elements which include Boron. The objectives for Boron are as follows in units of mg/L: 2.0 (15 March through 15 September) 0.8 (monthly mean, 15 March through 15 September) 2.6 (16 September through 14 March) 1.0 (monthly mean, 16 September through 14 March) 1.3 (monthly mean, critical year)

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Samples were collected from the San Joaquin River above Maze Boulevard station (541STC510).

Temporal Representation:

Samples were collected approximately once a week from July 2007 to June 2009.

Environmental Conditions:

QAPP Information:

SWAMP QAPP (2008).

QAPP Information Reference(s):

Surface Water Ambient Monitoring Program Quality Assurance Program Plan


DECISION ID	73493	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Selenium
Final Listing Decision:	Delist from 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Delist from 303(d) list (TMDL required list)(2016)
Revision Status	Original
Reason for Delisting:	Applicable WQS attained; threatened water no longer threatened
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for addition to the section 303(d) list under section 3.1 of the Listing Policy. Under this section a single line of evidence is necessary to assess listing status. Three lines of evidence are available in the administrative record to assess this pollutant. Zero of 449 samples exceeded the water quality objective. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against adding this water segment-pollutant combination to the section 303(d) list. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. Zero of 346 samples exceeded the evaluation guideline and this does not exceed the allowable frequency listed in Table 3.1 of the Listing Policy. 4. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be added to the section 303(d) list because applicable water quality standards for the pollutant are not being exceeded.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 73493, Selenium	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

6950

Pollutant:

Selenium

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Total

Beneficial Use:

Warm Freshwater Habitat

Number of Samples:

346

Number of Exceedances:

Data and Information Type:

Not Specified

Data Used to Assess Water Quality:

Zero of the 346 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation objective for Selenium.

Data Reference:

San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. This objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances. (CRWQCB, 2006) Selenium levels should not to exceed 5 ug/L (CTR)

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Samples were collected at SJR @ Maze.

Temporal Representation:

The samples were collected from Jan 4 2001 to Sep 27 2007

Environmental Conditions:

QAPP Information:

Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.

QAPP Information Reference(s):

Line of Evidence (LOE) for Decision ID 73493, Selenium	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

2737

Pollutant:

Selenium

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Not Recorded

Beneficial Use:

Warm Freshwater Habitat

Number of Samples:

Number of Exceedances:

Data and Information Type:

Not Specified

Data Used to Assess Water Quality:

Unspecified--This LOE is a placeholder to support a 303(d) listing decision made prior to 2006.

Data Reference:

RWB5S Grasslands Bypass FY0708 FY0809

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

Objective/Criterion Reference:

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Temporal Representation:

Environmental Conditions:

QAPP Information:

QA Info Missing

QAPP Information Reference(s):

Line of Evidence (LOE) for Decision ID 73493, Selenium	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

70252

Pollutant:

Selenium

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Total

Beneficial Use:

Warm Freshwater Habitat

Number of Samples:

103

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

SWAMP data indicates that 103 sample results exceed the criterion for Selenium.

Data Reference:

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

The selenium criterion continuous concentration (expressed as a 4-day average) to protect aquatic life in freshwater is 0.005 mg/L. (California Toxics Rule, 2000)

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Objective/Criterion Reference:

Code of Federal Regulations 40 part 131.38 Establishment of numeric criteria for priority toxic pollutants for the State of California. 7/1/2011 Edition

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Data for this line of evidence was collected at one monitoring site [ SJR @ Maze - 541STC510]

Temporal Representation:

Data was collected over the time period 7/5/2007-6/25/2009.

Environmental Conditions:

Staff is not aware of any special conditions that might affect interpretation of the data.

QAPP Information:

The SWAMP QAPP (2008) was followed.

QAPP Information Reference(s):

Surface Water Ambient Monitoring Program Quality Assurance Program Plan


DECISION ID	77750	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Temperature, water
Final Listing Decision:	Do Not Delist from 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Do Not Delist from 303(d) list (TMDL required list)(2016)
Revision Status	Original
Sources:	A Source Unknown
Expected TMDL Completion Date:	2027
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for removal from the CWA section 303(d) List under section 4.2 of the Listing Policy. Under this section a single line of evidence is necessary to assess listing status. Four lines of evidence are available in the administrative record to assess this pollutant. 28 of the 31 samples exceed the evaluation guideline for MIGR. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against removing this water segment-pollutant combination from the CWA section 303(d) List. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. 28 of the 31 samples exceed the evaluation guideline for MIGR and this exceeds the allowable frequency listed in Table 4.2 of the Listing Policy. 4. Pursuant to section 4.11 of the Listing Policy, no additional data and information are available indicating that standards are met.

Regional Board Decision Recommendation:	After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be placed on the section 303(d) list because applicable water quality standards are not being exceeded.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 77750, Temperature, water	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

70257

Pollutant:

Temperature, water

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

None

Beneficial Use:

Fish Migration

Number of Samples:

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

Monitoring occurred in 2008 ans 2009. The 7DADM was recorded weekly for each river mile. The maximum 7DADM value or Maximum Weekly Maximum Temperature (MWMT) was calculated for each year. Based on the data provided, 3 out of 3 MWMT values exceeded the <20 degrees C criteria in 2008 and 2009.

Data Reference:

Data for Hydromodification in Various Water Bodies in Region 5, 2006-2009.

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

The natural receiving water temperature of intrastate waters shall not be altered unless it can be demonstrated to the satisfaction of the Regional Water Board that such alteration in temperature does not adversely affect beneficial uses. In determining compliance with the water quality objectives for temperature, appropriate averaging periods may be applied provided that beneficial uses will be fully protected. (Central Valley Regional Board Basin Plan, Pg. III-8.00, Water Quality Objectives)

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

The guideline used was the 2003 US EPA Region 10 Guidance for Pacific Northwest State and Tribal Temperature Water Quality Standards (USEPA, 2003). The document includes recommended temperature criteria for salmon and trout based on different life stages. The recommended temperature for salmon and trout migration is <20 degrees C for a 7DADM. The adult migration life stage occurs from river mile 80 (Gardner Cove) to river mile 84 (above West Side Lift Canal). This life stage occurs during Julian weeks 11 through 24, which is approximately March 15th through June 15th.

Guideline Reference:

EPA Region 10 Guidance for Pacific Northwest State and Tribal Temperature Water Quality Standards. EPA 910-B-03-002. U.S. Environmental Protection Agency Region 10 Office of Water, Seattle, WA.

Spatial Representation:

Samples were collected at the following locations in the water body: SJAWSLC-San Joaquin River above West Side Lift Canal SJATR-San Joaquin River above Tuolumne River SJOFC-San Joaquin River at the Old Fisherman's Club

Temporal Representation:

The smolt out migration occurs from occurs between March 15th and June 15th. Data was collected during this life stage on a continuous basis (hourly intervals) in 2008 and 2009 (although some sites did not have data for both years during this life stage).

Environmental Conditions:

QAPP Information:

Data is supported by a Quality Assurance Project Plan (QAPP) pursuant to the requirements of 40 CFR 31.45 and are acceptable for use in developing the section 303(d) list.

QAPP Information Reference(s):

Line of Evidence (LOE) for Decision ID 77750, Temperature, water	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

26524

Pollutant:

Temperature, water

LOE Subgroup:

Pollutant-Water

Matrix:

Not Specified

Fraction:

None

Beneficial Use:

Cold Freshwater Habitat

Aquatic Life Use:

Fish Migration

Number of Samples:

Number of Exceedances:

Data and Information Type:

QUALITATIVE (EVALUATED) ASSESSMENT - UNSPECIFIED

Data Used to Assess Water Quality:

The San Joaquin watershed had a large spring-run of chinook salmon, along with a much smaller fall-run (Hatton and Clark, 1942). By about 1920, chinook salmon populations declined due to changes within the upper San Joaquin watershed. Many changes such as dams, water diversion, mining and harvest have been suggested for their decline. By 1950¿s salmon became extinct in the mainstem San Joaquin River and populations of less than 500 were a common occurrence in the Merced, Tuolumne and Stanislaus Rivers.

However, the gradual decline in salmon populations has been tied to the unsuitable high water temperatures, which increases juveniles susceptibility to disease, predation and accumulation of contaminants (Myrick and Cech 2001). Since 1952 there have been several peak escapement trends, but overall, the trend over time to 2006 has been declining dramatically with the 1952 peak of over 8,000 salmon to 1,000 salmon in 2006.

Steelhead, described by Latta (1929, 1949) and other authors write about good numbers and casually being taken by indigeneous peoples. Now the runs are extinct in the mainstem and are listed as a Federally Threatened species.

Data Reference:

Cover letter, data and information regarding elevated water temperatures in the San Joaquin, Merced, Stanislaus, and Tuolumne rivers

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

The natural receiving water temperature of intrastate waters shall not be altered unless it can be demonstrated to the satisfaction of the Regional Water Board that such alteration in temperature does not adversely affect beneficial uses.

In determining compliance with the water quality objectives for temperature, appropriate averaging period may be applies provided that beneficial uses will be fully protected. (Central Valley Regional Board Basin Plan, Pg. III-8.00, Water Quality Objectives)

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

In the absence of necessary data to interpret numeric water quality objectives, recent temperature monitoring data shall be compared to the temperature requirements of aquatic life in the water segment. In many cases, fisheries, particularly salmonids, represent the beneficial uses most sensitive to temperature. Information on current and historic conditions and distribution of sensitive beneficial uses (e.g., fishery resources) in the water segment is necessary, as well as recent temperature data reflective of conditions experienced by the most sensitive life stage of the aquatic life species. If temperature data from past (historic) periods corresponding to times when the beneficial use was fully supported are not available, information about presence/absence or abundance of sensitive aquatic life species shall be used to infer past (historic) temperature conditions if loss of habitat, diversions, toxic spills, and other factors are also considered (SWRCB, 2004).

Guideline Reference:

Water Quality Control Policy For Developing California's Clean Water Act Section 303(d) List. Sacramento, CA: State Water Resources Control Board, California Environmental Protection Agency.

Spatial Representation:

San Joaquin River

Temporal Representation:

Information referenced from year 1920 through 2006.

Environmental Conditions:

QAPP Information:

San Joaquin Fall-Run Chinook Salmon and Steelhead Rainbow Trout Historical Population Trend Summary. Dean Marston. September 2007.

QAPP Information Reference(s):

Line of Evidence (LOE) for Decision ID 77750, Temperature, water	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

26229

Pollutant:

Temperature, water

LOE Subgroup:

Pollutant-Water

Matrix:

Not Specified

Fraction:

None

Beneficial Use:

Fish Migration

Number of Samples:

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

Stream temperatures were measured by California Department of Fish and Game (CDFG) using data loggers (Stowaways, Tidbits and Hobo Temp Pros). Monitoring occurred from 1996 to 2006 depending on the monitoring station, identified by a river mile. The 7DADM was recorded weekly for each river mile. The maximum 7DADM value was calculated for each year. Based on the data provided, 13 out of 13 maximum 7DADM values exceeded the <20 degrees C criteria from 1996 to 2006.

Data Reference:

USEPA Region 9 data summary for addition of temperature to California 2010 303(d) list for San Joaquin River segments

USEPA Partial Approval Disapproval Letter and enclosures for California's 2008-2010 303(d) List

USEPA Final Decision Letter with enclosures and responsiveness summary regarding waters added to California's 2008-2010 303(d) List

Cover letter, data and information regarding elevated water temperatures in the San Joaquin, Merced, Stanislaus, and Tuolumne rivers

Access and DSS database files of water temperature data, one each for the San Joaquin, Merced, Stanislaus, and Tuolumne rivers

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

The natural receiving water temperature of intrastate waters shall not be altered unless it can be demonstrated to the satisfaction of the Regional Water Board that such alteration in temperature does not adversely affect beneficial uses.

In determining compliance with the water quality objectives for temperature, appropriate averaging period may be applies provided that beneficial uses will be fully protected. (Central Valley Regional Board Basin Plan, Pg. III-8.00, Water Quality Objectives)

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

The guideline used was the 2003 US EPA Region 10 Guidance for Pacific Northwest State and Tribal Temperature Water Quality Standards (USEPA, 2003). The document includes recommended temperature criteria for salmon and trout based on different life stages. The recommended temperature for salmon and trout adult migration is <20 degrees C for a 7DADM. The adult migration life stage occurs from river mile river mile 80 (Gardner Cove) to river mile 84 (above West Side Lift Canal). This life stage occurs during Julian weeks 36 through 43, which is approximately September 1st through October 31st.

Guideline Reference:

EPA Region 10 Guidance for Pacific Northwest State and Tribal Temperature Water Quality Standards. EPA 910-B-03-002. U.S. Environmental Protection Agency Region 10 Office of Water, Seattle, WA.

Spatial Representation:

The adult migration life stage occurs from river mile 80 (Gardner Cove) to river mile 84 (above West Side Lift Canal). Stream temperatures were monitored at the following stream locations during the adult migration life stage: River Miles 80 (Gardner Cove), 81 (Old Fisherman's Club), 83 (above Tuolumne River), and 84 (above West Side Lift Canal).

Temporal Representation:

The adult migration life stage occurs during Julian weeks 36 through 43, which is approximately September 1st through October 31st. Data was collected during this life stage on a continuous basis (hourly intervals) from 1996 to 2006, depending on the station and year monitored. Refer to the CDFG 2007 report (Gordus, 2007) for specific years for each location.

Environmental Conditions:

QAPP Information:

Data is supported by a Quality Assurance Project Plan (QAPP) pursuant to the requirements of 40 CFR 31.45 and are acceptable for use in developing the section 303(d) list.

QAPP Information Reference(s):

Line of Evidence (LOE) for Decision ID 77750, Temperature, water	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

26523

Pollutant:

Temperature, water

LOE Subgroup:

Pollutant-Water

Matrix:

Not Specified

Fraction:

None

Beneficial Use:

Fish Migration

Number of Samples:

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

Stream temperatures were measured by CDFG using data loggers (Stowaways, Tidbits and Hobo Temp Pros). Monitoring occurred from 1997 to 2007 depending on the monitoring station, identified by a river mile. The 7DADM was recorded weekly for each river mile. The maximum 7DADM value was calculated for each year. Based on the data provided, 9 out of 12 maximum 7DADM values exceeded the <20 degrees C criteria from 1997 to 2007.

Data Reference:

USEPA Region 9 data summary for addition of temperature to California 2010 303(d) list for San Joaquin River segments

USEPA Partial Approval Disapproval Letter and enclosures for California's 2008-2010 303(d) List

USEPA Final Decision Letter with enclosures and responsiveness summary regarding waters added to California's 2008-2010 303(d) List

Cover letter, data and information regarding elevated water temperatures in the San Joaquin, Merced, Stanislaus, and Tuolumne rivers

Access and DSS database files of water temperature data, one each for the San Joaquin, Merced, Stanislaus, and Tuolumne rivers

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

The natural receiving water temperature of intrastate waters shall not be altered unless it can be demonstrated to the satisfaction of the Regional Water Board that such alteration in temperature does not adversely affect beneficial uses.

In determining compliance with the water quality objectives for temperature, appropriate averaging period may be applies provided that beneficial uses will be fully protected. (Central Valley Regional Board Basin Plan, Pg. III-8.00, Water Quality Objectives)

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

Guideline Reference:

EPA Region 10 Guidance for Pacific Northwest State and Tribal Temperature Water Quality Standards. EPA 910-B-03-002. U.S. Environmental Protection Agency Region 10 Office of Water, Seattle, WA.

Spatial Representation:

The smolt out migration life stage occurs from river mile 80 (Gardner Cove) to river mile 84 (above West Side Lift Canal). Stream temperatures were monitored at the following stream location during the migration life stage: River Miles 80 (Gardner Cove), 81 (Old Fisherman's Club), 83 (above Tuolumne River), and 84 (above West Side Lift Canal).

Temporal Representation:

The smolt out migration life stage occurs from river mile 80 (Gardner Cove) to river mile 84 (above West Side Lift Canal). Data was collected during this life stage on a continuous basis (hourly intervals) from 1997 to 2007, depending on the station and year monitored. Refer to the CDFG 2007 report (Gordus, 2007) for specific years for each location.

Environmental Conditions:

QAPP Information:

Data is supported by a Quality Assurance Project Plan (QAPP) pursuant to the requirements of 40 CFR 31.45 and are acceptable for use in developing the section 303(d) list.

QAPP Information Reference(s):

Line of Evidence (LOE) for Decision ID 77750, Temperature, water	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

70258

Pollutant:

Temperature, water

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

None

Beneficial Use:

Fish Migration

Number of Samples:

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

Data Reference:

Data for Hydromodification in Various Water Bodies in Region 5, 2006-2009.

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

The guideline used was the 2003 US EPA Region 10 Guidance for Pacific Northwest State and Tribal Temperature Water Quality Standards (USEPA, 2003). The document includes recommended temperature criteria for salmon and trout based on different life stages. The recommended temperature for salmon and trout adult migration is <20 degrees C for a 7DADM. The adult migration life stage occurs from river mile river mile 80 (Gardner Cove) to river mile 84 (above West Side Lift Canal). This life stage occurs during Julian weeks 36 through 43, which is approximately September 1st through October 31st.

Guideline Reference:

EPA Region 10 Guidance for Pacific Northwest State and Tribal Temperature Water Quality Standards. EPA 910-B-03-002. U.S. Environmental Protection Agency Region 10 Office of Water, Seattle, WA.

Spatial Representation:

Temporal Representation:

The adult migration life stage occurs during Julian weeks 36 through 43, which is approximately September 1st through October 31st. Data was collected during this life stage on a continuous basis (hourly intervals) in 2008 and 2009 (although some sites did not have data for both years during this life stage).

Environmental Conditions:

QAPP Information:

Data is supported by a Quality Assurance Project Plan (QAPP) pursuant to the requirements of 40 CFR 31.45 and are acceptable for use in developing the section 303(d) list.

QAPP Information Reference(s):


DECISION ID	75019	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Toxicity
Final Listing Decision:	Do Not Delist from 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Do Not Delist from 303(d) list (TMDL required list)(2016)
Revision Status	Original
Sources:	A Source Unknown
Expected TMDL Completion Date:	2019
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	No new data or information was available during the 2014 Integrated Report cycle to reassess this water body segment and pollutant. The decision has not changed. This pollutant is being considered for removal from the section 303(d) list under section 4.1 of the Listing Policy. Under this section a single line of evidence is necessary to assess listing status. Two lines of evidence are available in the administrative record to assess pollutant. None of samples exceed the water quality objective. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against removing this water segment-pollutant combination from the section 303(d) list. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. None of 1 samples tested with fathead minnow exceeded the narrative toxicity objective and this does not exceed the allowable frequency listed in Table 3.1 of the Listing Policy. 4. 303(d) listing decisions made prior to 2006 were not held in an assessment database. The Regional Boards will update this decision when new data and information become available and are assessed. 5. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are being met.

Regional Board Decision Recommendation:	This is a decision previously approved by the State Water Resources Control Board and the USEPA. No new data or information was available during the 2014 Integrated Report cycle to reassess this water body segment and pollutant. The decision has not changed.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 75019, Toxicity	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

4547

Pollutant:

Unknown Toxicity

LOE Subgroup:

Toxicity

Matrix:

Water

Fraction:

Not Recorded

Beneficial Use:

Warm Freshwater Habitat

Number of Samples:

Number of Exceedances:

Data and Information Type:

Not Specified

Data Used to Assess Water Quality:

Unspecified--This LOE is a placeholder to support a 303(d) listing decision made prior to 2006.

Data Reference:

Monitoring Data from the Surface Water Ambient Monitoring Program (SWAMP), San Joaquin River Basin - 2007 Data Review

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

Objective/Criterion Reference:

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Unspecified

Temporal Representation:

Unspecified

Environmental Conditions:

Unspecified

QAPP Information:

Unspecified

QAPP Information Reference(s):

Line of Evidence (LOE) for Decision ID 75019, Toxicity	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

22688

Pollutant:

Toxicity

LOE Subgroup:

Toxicity

Matrix:

Water

Fraction:

Total

Beneficial Use:

Warm Freshwater Habitat

Aquatic Life Use:

Warm Freshwater Habitat

Number of Samples:

Number of Exceedances:

Data and Information Type:

TOXICITY TESTING

Data Used to Assess Water Quality:

The one sample tested with Pimephales promelas was not toxic nor did it violate the narrative toxicity objective.

Data Reference:

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

Statistically significant difference from control using a Fisher's Exact test with 4-day acute-style toxicity tests.

Guideline Reference:

Methods for Measuring the Acute Toxicity of Effluents and Receiving Waters to Freshwater and Marine Organisms, Fifth Edition. U.S. Environmental Protection Agency Office of Water, Washington, DC EPA-821-R-02-012

Spatial Representation:

The sample was collected from San Joaquin River at Maze.

Temporal Representation:

The sample was collected in October 2000

Environmental Conditions:

QAPP Information:

Data quality: Excellent. Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.

QAPP Information Reference(s):

Quality Assurance Management Plan for the State of California's Surface Water Ambient Monitoring Program. Sacramento, CA. State Water Resources Control Board. SWAMP. December 2002 (1st version)


DECISION ID	70480	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Ammonia
Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for listing under sections 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. Data is available from 1 line of evidence for this pollutant. Based on the readily available data and information, the weight of evidence indicates that there is not sufficient justification for placing this water segment-pollution combination on the section 303(d) list. The recommendation is based on staff findings that 0 of 24 available concentrations exceeded the water quality objective and this does not exceed the allowable frequency using Table 3.1 of the Listing Policy. Table 3.1 of the listing policy recommends listing if a sample size of 24 has 2 or more samples that exceed the evaluation criteria. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	This is a decision previously approved by the State Water Resources Control Board and the USEPA. No new data were assessed by the Regional Board for the current cycle. The decision has not changed.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 70480, Ammonia	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

6587

Pollutant:

Ammonia

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

None

Beneficial Use:

Warm Freshwater Habitat

Number of Samples:

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

0 of the 24 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation guideline for Ammonia.

Data Reference:

San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

Ammonia levels should not to exceed the calculated limit. Freshwater Aquatic Life Protection (Salmonid present) Criteria Maximum Concentration (CMC) (1-hour Average (mg N/L)) calculated based on the following formula: CMC = (0.275/(1 + 107.204-pH)) + (39.0/(1 + 10pH-7.204)) which incorporates pH (US EPA, 2005: Appendix C)

Guideline Reference:

1999 Update of Ambient Water Quality Criteria for Ammonia

Spatial Representation:

Samples were collected at SJR @ Maze.

Temporal Representation:

The samples were collected from May 25 2000 to Jun 13 2002.

Environmental Conditions:

QAPP Information:

Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.

QAPP Information Reference(s):


DECISION ID	70673	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Arsenic
Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for placement on the section 303(d) list under section 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. One line of evidence are available in the administrative record to assess this pollutant. None of the samples exceed the water quality objective. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against placing this water segment-pollutant combination on the section 303(d) list in the Water Quality Limited Segments category. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. None of 21 samples exceeded the USEPA Primary MCL and this does not exceed the allowable frequency listed in Table 3.1 of the Listing Policy. 4. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	This is a decision previously approved by the State Water Resources Control Board and the USEPA. No new data were assessed by the Regional Board for the current cycle. The decision has not changed.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 70673, Arsenic	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

6588

Pollutant:

Arsenic

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Total

Beneficial Use:

Municipal & Domestic Supply

Number of Samples:

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

None of the 21 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation objective for Arsenic.

Data Reference:

San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

Arsenic levels should not exceed 10 ug/L (USEPA Primary MCL).

Objective/Criterion Reference:

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Samples were collected at SJR @ Maze.

Temporal Representation:

The samples were collected from Jun 7 2001 to Jun 26 2003

Environmental Conditions:

QAPP Information:

Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.

QAPP Information Reference(s):


DECISION ID	70482	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Cadmium
Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for listing under sections 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. Data is available from 2 lines of evidence for this pollutant. Based on the readily available data and information, the weight of evidence indicates that there is not sufficient justification for placing this water segment-pollution combination on the section 303(d) list. The recommendation is based on staff findings that 0 of 10 available concentrations exceeded the water quality objective and this does not exceed the allowable frequency using Table 3.1 of the Listing Policy. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	This is a decision previously approved by the State Water Resources Control Board and the USEPA. No new data were assessed by the Regional Board for the current cycle. The decision has not changed.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 70482, Cadmium	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

6592

Pollutant:

Cadmium

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Dissolved

Beneficial Use:

Warm Freshwater Habitat

Number of Samples:

Number of Exceedances:

Data and Information Type:

Not Specified

Data Used to Assess Water Quality:

None of the 10 samples collected by the Surface Water Ambient Monitoring Program exceeded the calculated CTR criterion for dissolved cadmium

Data Reference:

San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

Dissolved cadmium levels should not exceed the calculated limit based on the formula: Criteria Maximum Concentration (1-hour Average dissolved)=(EXP(1.128*LN(hardness)-3.6867))*(1.136672-(LN(hardness)*0.041838))

Objective/Criterion Reference:

Water Quality Standards 2000. Establishment of numeric criteria for priority toxic pollutants for the State of California: Rules and regulations. Federal Register Vol. 65, No. 97. Washington, D.C.: Environmental Protection Agency

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Samples were collected from the San Joaquin River at Maze
Boulevard

Temporal Representation:

The samples were collected between June 7, 2001 and November 21, 2002

Environmental Conditions:

QAPP Information:

Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.

QAPP Information Reference(s):


DECISION ID	72200	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Copper
Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for placement on the section 303(d) list under section 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. Two lines of evidence are available in the administrative record to assess this pollutant. One of the samples exceed the water quality objective. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against placing this water segment-pollutant combination on the section 303(d) list in the Water Quality Limited Segments category. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. None of 17 samples exceed the California Toxics Rule 4-day average criteria for dissolved Copper and 1 of the 14 samples exceed the California Toxics Rule 4-day average criteria for total Copper. A total of 1 out of 31 samples exceed the criteria and this does not exceed the allowable frequency listed in Table 3.1 of the Listing Policy. Total Copper data was used when dissolved Copper data was not available. 4. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	This is a decision previously approved by the State Water Resources Control Board and the USEPA. No new data were assessed by the Regional Board for the current cycle. The decision has not changed.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 72200, Copper	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

6595

Pollutant:

Copper

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Dissolved

Beneficial Use:

Warm Freshwater Habitat

Number of Samples:

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

None of the 17 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation objective for Copper.

Data Reference:

San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

California Toxics Rule 4-day average criteria for dissolved Copper.

Objective/Criterion Reference:

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Samples were collected at SJR @ Maze.

Temporal Representation:

The samples were collected monthly from November 2000 to November 2002.

Environmental Conditions:

QAPP Information:

Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.

QAPP Information Reference(s):

Line of Evidence (LOE) for Decision ID 72200, Copper	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

6593

Pollutant:

Copper

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Total

Beneficial Use:

Warm Freshwater Habitat

Number of Samples:

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

One of the 14 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation objective for Copper.

Data Reference:

San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

California Toxics Rule 4-day average criteria for total Copper.

Objective/Criterion Reference:

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Samples were collected at SJR @ Maze.

Temporal Representation:

The samples were collected from Feb 1 1986 to Jun 26 2003

Environmental Conditions:

QAPP Information:

Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.

QAPP Information Reference(s):


DECISION ID	72944	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	DDE (Dichlorodiphenyldichloroethylene)
Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for placement on the section 303(d) list under section 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. One lines of evidence are available in the administrative record to assess this pollutant. One of the samples exceed the water quality objective. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against placing this water segment-pollutant combination on the section 303(d) list in the Water Quality Limited Segments category. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. One of 5 samples exceeded the California Toxic Rule/USEPA (CTR/USEPA) criteria limit of 0.00059 μg/L for DDE based on a human health carcinogenic risk level of 10-6 for consumption of water and aquatic organisms and this does not exceed the allowable frequency listed in Table 3.1 of the Listing Policy. 4. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	This is a decision previously approved by the State Water Resources Control Board and the USEPA. No new data were assessed by the Regional Board for the current cycle. The decision has not changed.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 72944, DDE (Dichlorodiphenyldichloroethylene)	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

21909

Pollutant:

DDE (Dichlorodiphenyldichloroethylene)

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Total

Beneficial Use:

Commercial or recreational collection of fish, shellfish, or organisms

Number of Samples:

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

- Twenty (20) water samples were taken from the San Joaquin River at Maze Road bridge near Modesto, California in the Tuolumne River to Stanislaus River stretch from April 2001 through August of 2001. - These were averaged on a 30-day basis and resulted five samples. - One of the available five water samples exceeded the California Toxic Rule/USEPA (CTR/USEPA) criteria limit of 0.00059 ug/L for DDE (p,p'-DDE; o,p'-DDE) based on a human health carcinogenic risk level of 10-6 for consumption of water and aquatic organisms.- Fifteen water samples had high reporting limits hence the data could not be used in the analysis according to the Listing Policy, Section 6.5.1.1.

Data Reference:

National Water Quality Assessment database, San Joaquin and Tulare Basins data

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

- Sacramento/San Joaquin River Basin Plan (CVRWQCB. 2007)Pesticides: Total identifiable persistent chlorinated hydrocarbon pesticides shall not be present in the water column at concentrations detectable within the accuracy of analytical methods approved by the Environmental Protection Agency or the Executive Officer.- California Toxics Rule Criteria (USEPA, 2000)Inland Surface Waters based on drinking water and aquatic organism consumption. The criteria are based on human health protection for carcinogenicity at 1-in-a-million risk level (30-day average) for DDE 0.00059 ug/L.

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Objective/Criterion Reference:

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Samples were collected from the San Joaquin River (in the Tuolumne River to Stanislaus River stretch) at Maze Road bridge near Modesto, California.

Temporal Representation:

Samples were collected between April 2001 and August 2001. Samples were collected at weekly intervals.

Environmental Conditions:

QAPP Information:

Data quality: Good. In accordance with section 6.1.4 of the Listing Policy, data from major monitoring programs in California and Published USGS reports are considered of adequate quality.

QAPP Information Reference(s):


DECISION ID	90489	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Indicator Bacteria
Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for placement on the CWA section 303(d) List under section 3.2 of the Listing Policy. Under section 3.2 a single line of evidence is necessary to assess listing status. Three lines of evidence are available in the administrative record to assess this pollutant. Zero of 46 water samples exceed the evaluation guideline for total coliform. Eleven of 110 water samples exceed the evaluation guideline for E. coli. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against placing this water segment-pollutant combination on the CWA section 303(d) List in the Water Quality Limited Segments category. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. Zero of 46 water samples exceed the evaluation guideline for total coliform, and this does not exceed the allowable frequency listed in Table 3.2 of the Listing Policy.. Eleven of 110 water samples exceed the evaluation guideline for E. coli, and this does not exceed the allowable frequency listed in Table 3.2 of the Listing Policy. 4. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be placed on the section 303(d) list because applicable water quality standards are not being exceeded.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 90489, Indicator Bacteria	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

23346

Pollutant:

Escherichia coli (E. coli)

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

None

Beneficial Use:

Water Contact Recreation

Number of Samples:

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

The Central Valley Regional Water Quality Control Board Surface Water Ambient Monitoring Program collected 63 samples from July 2002 to June 2006. Nine out of the 63 samples exceeded the evaluation objective.

Data Reference:

Monitoring Data from the Surface Water Ambient Monitoring Program (SWAMP), San Joaquin River Basin - 2007 Data Review

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

All waters shall be maintained free of toxic substances in concentrations that produce detrimental physiological responses in human, plant, animal, or aquatic life. The objective applies regardless of whether the toxicity is caused by a single substance or the interactive effect of multiple substances.

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Objective/Criterion Reference:

Ambient Water Quality Criteria for Bacteria - 1986. EPA440/5-84-002

Evaluation Guideline:

The USEPA E. Coli objective of 235/100 mL in any single sample (USEPA 1986).

Guideline Reference:

Ambient Water Quality Criteria for Bacteria - 1986. EPA440/5-84-002

Spatial Representation:

Samples were collected at San Joaquin River at Maze Boulevard.

Temporal Representation:

Sampling occurred from July 2002 to June 2006.

Environmental Conditions:

QAPP Information:

QAPP Information Reference(s):

Quality Assurance Management Plan for the State of California's Surface Water Ambient Monitoring Program. Sacramento, CA. State Water Resources Control Board. SWAMP. December 2002 (1st version)

Line of Evidence (LOE) for Decision ID 90489, Indicator Bacteria	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

70242

Pollutant:

Escherichia coli (E. coli)

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

None

Beneficial Use:

Water Contact Recreation

Number of Samples:

Number of Exceedances:

Data and Information Type:

PATHOGEN MONITORING

Data Used to Assess Water Quality:

SWAMP data indicates that two of 47 sample results exceed the evaluation guideline value for Escherichia coli.

Data Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

Waters shall not contain chemical constituents in concentrations that adversely affect beneficial uses. (Water Quality Control Plan, Central Valley Region, Sacramento River and San Joaquin River Basins)

Objective/Criterion Reference:

Evaluation Guideline:

The U.S. EPA recommended objective for a single-sample maximum allowable density of E. coli in freshwater designated-beach areas is 235 MPN/100mL.

Guideline Reference:

Ambient Water Quality Criteria for Bacteria - 1986. EPA440/5-84-002

Spatial Representation:

Data for this line of evidence was collected at one monitoring site [ SJR @ Maze - 541STC510]

Temporal Representation:

Data was collected over the time period 7/12/2007-6/25/2009.

Environmental Conditions:

Staff is not aware of any special conditions that might affect interpretation of the data.

QAPP Information:

The SWAMP QAPP (2008) was followed.

QAPP Information Reference(s):

Surface Water Ambient Monitoring Program Quality Assurance Program Plan


DECISION ID	70728	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Lead
Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for listing under sections 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. Data is available from 2 lines of evidence for this pollutant. Based on the readily available data and information, the weight of evidence indicates that there is not sufficient justification for placing this water segment-pollution combination on the section 303(d) list. The recommendation is based on staff findings that 0 of 17 available concentrations exceeded the water quality objective and this does not exceed the allowable frequency using Table 3.1 of the Listing Policy. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	This is a decision previously approved by the State Water Resources Control Board and the USEPA. No new data were assessed by the Regional Board for the current cycle. The decision has not changed.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 70728, Lead	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

6597

Pollutant:

Lead

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Dissolved

Beneficial Use:

Warm Freshwater Habitat

Number of Samples:

Number of Exceedances:

Data and Information Type:

Not Specified

Data Used to Assess Water Quality:

Zero of the 17 samples collected by the Surface Water Ambient Monitoring Program exceeded the calculated CTR CMC for dissolved lead

Data Reference:

San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

Dissolved lead levels should not exceed the calculated CTR value based on the formula: Criteria Maximum Concentration (1-hour Average, dissolved)=(EXP(1.273*LN(hardness)-1.46))*(1.46203-(LN(hardness)*0.145712))

Objective/Criterion Reference:

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Samples were collected from the San Joaquin River at Maze Boulevard

Temporal Representation:

The samples were collected between November 30, 2000 and November 21, 2002

Environmental Conditions:

QAPP Information:

Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.

QAPP Information Reference(s):


DECISION ID	74470	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Lindane/gamma Hexachlorocyclohexane (gamma-HCH)
Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for placement on the section 303(d) list under section 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. One lines of evidence are available in the administrative record to assess this pollutant. None of the samples exceed the water quality objective. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against placing this water segment-pollutant combination on the section 303(d) list in the Water Quality Limited Segments category. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. None of the available twenty water samples exceeded the California Toxic Rule/USEPA (CTR/USEPA) criteria for human consumption of water and organisms with a 10-6 risk for carcinogens of 0.019 mg/g and this does not exceed the allowable frequency listed in Table 3.1 of the Listing Policy. 4. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	This is a decision previously approved by the State Water Resources Control Board and the USEPA. No new data were assessed by the Regional Board for the current cycle. The decision has not changed.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 74470, Lindane/gamma Hexachlorocyclohexane (gamma-HCH)	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

23422

Pollutant:

Lindane/gamma Hexachlorocyclohexane (gamma-HCH)

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Total

Beneficial Use:

Municipal & Domestic Supply

Number of Samples:

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

- Twenty water samples were collected between April 2001 and August 2001 from the San Joaquin River at Maze Road bridge near Modesto California. This site lies in the Tuolumne River to Stanislaus River Reach of the San Joaquin River.

- None of the twenty water samples exceeded the CTR criteria of 0.019 mg/g for human consumption of water and organisms.

Data Reference:

National Water Quality Assessment database, San Joaquin and Tulare Basins data

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

- Sacramento/San Joaquin River Basin Plan (CVRWQCB. 2007)Pesticides: Total identifiable persistent chlorinated hydrocarbon pesticides shall not be present in the water column at concentrations detectable within the accuracy of analytical methods approved by the Environmental Protection Agency or the Executive Officer.

- California Toxics Rule Criteria (USEPA, 2000) based on criteria for human consumption of water and organisms with a 10-6 risk for carcinogens of 0.019 mg/g.

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Samples were collected from the San Joaquin River at Maze Road bridge near Modesto California. This site lies in the Tuolumne River to Stanislaus River Reach of the San Joaquin River.

Temporal Representation:

Samples were collected at weekly intervals between April 2001 and August 2001.

Environmental Conditions:

QAPP Information:

Data quality: Good. U.S. Geological Survey, variously dated, National field manual for the collection of water-quality data: U.S. Geological Survey Techniques of Water-Resources Investigations, book 9, chaps. A1-A9, available online at http://pubs.water.usgs.gov/twri9A

QAPP Information Reference(s):


DECISION ID	71983	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Molybdenum
Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for listing under sections 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. Data is available from 1 line of evidence for this pollutant. Based on the readily available data and information, the weight of evidence indicates that there is not sufficient justification for placing this water segment-pollution combination on the section 303(d) list. The recommendation is based on staff findings that 0 of 11 available concentrations exceeded the water quality objective and this does not exceed the allowable frequency using Table 3.1 of the Listing Policy. Table 3.1 of the listing policy recommends listing if a sample size of 11 has 2 or more samples that exceed the evaluation criteria. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	This is a decision previously approved by the State Water Resources Control Board and the USEPA. No new data were assessed by the Regional Board for the current cycle. The decision has not changed.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 71983, Molybdenum	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

6609

Pollutant:

Molybdenum

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Total

Beneficial Use:

Warm Freshwater Habitat

Number of Samples:

Number of Exceedances:

Data and Information Type:

Not Specified

Data Used to Assess Water Quality:

0 of the 11 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation objective for Molybdenum.

Data Reference:

San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Samples were collected at SJR @ Maze.

Temporal Representation:

The samples were collected from Aug 27 1998 to Oct 30 2003

Environmental Conditions:

QAPP Information:

Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.

QAPP Information Reference(s):


DECISION ID	70132	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Nickel
Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for listing under sections 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. Data is available from 2 lines of evidence for this pollutant. Based on the readily available data and information, the weight of evidence indicates that there is not sufficient justification for placing this water segment-pollution combination on the section 303(d) list. The recommendation is based on staff findings that 0 of 17 available concentrations exceeded the water quality objective and this does not exceed the allowable frequency using Table 3.1 of the Listing Policy. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	This is a decision previously approved by the State Water Resources Control Board and the USEPA. No new data were assessed by the Regional Board for the current cycle. The decision has not changed.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 70132, Nickel	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

6611

Pollutant:

Nickel

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Dissolved

Beneficial Use:

Warm Freshwater Habitat

Number of Samples:

Number of Exceedances:

Data and Information Type:

Not Specified

Data Used to Assess Water Quality:

Zero of the 17 samples collected by the Surface Water Ambient Monitoring Program exceeded the calculated CTR CMC for dissolved nickel

Data Reference:

San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

Dissolved nickel levels should not exceed the calculated CTR limit based on the formula: Criteria Maximum Concentration (1-hour Average, dissolved)=(EXP(0.846*LN(hardness)+2.255))*(0.998)

Objective/Criterion Reference:

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Samples were collected from the San Joaquin River at Maze Boulevard

Temporal Representation:

The samples were collected between February 1, 1986, and June 26, 2003

Environmental Conditions:

QAPP Information:

Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.

QAPP Information Reference(s):


DECISION ID	70808	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Nitrate as Nitrate (NO3)
Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for listing under sections 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. Data is available from 1 line of evidence for this pollutant. Based on the readily available data and information, the weight of evidence indicates that there is not sufficient justification for placing this water segment-pollution combination on the section 303(d) list. The recommendation is based on staff findings that 0 of 22 available concentrations exceeded the water quality objective and this does not exceed the allowable frequency using Table 3.1 of the Listing Policy. Table 3.1 of the listing policy recommends listing if a sample size of 22 has 2 or more samples that exceed the evaluation criteria. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be placed on the section 303(d) list because applicable water quality standards are not being exceeded.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 70808, Nitrate as Nitrate (NO3)	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

6612

Pollutant:

Nitrate as Nitrate (NO3)

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

None

Beneficial Use:

Warm Freshwater Habitat

Number of Samples:

Number of Exceedances:

Data and Information Type:

Not Specified

Data Used to Assess Water Quality:

0 of the 22 samples collected by the Surface Water Ambient Monitoring Program exceeded the evaluation guideline for Nitrate-N.

Data Reference:

San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

Nitrate-N levels should not to exceed 100 mg/L (USEPA National Ambient Water Quality Objective)

Guideline Reference:

Spatial Representation:

Samples were collected at SJR @ Maze.

Temporal Representation:

The samples were collected from Jun 29 2000 to Sep 27 2001

Environmental Conditions:

QAPP Information:

Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.

QAPP Information Reference(s):


DECISION ID	75479	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Oxygen, Dissolved
Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for placement on the section 303(d) list under section 3.2 of the Listing Policy. Under section 3.2 a single line of evidence is necessary to assess listing status. Two line of evidence are available in the administrative record to assess this pollutant. Two of 362 samples exceed the water quality objective for the COLD beneficial use, and none of 110 sample exceed the water quality objective for the SPAWN beneficial uses. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against placing this water segment-pollutant combination on the section 303(d) list in the Water Quality Limited Segments category. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. Two of three hundred and sixty-two samples fell below the minimum criterion water quality objective for COLD and none of 110 samples fell below the minimum criterion water quality objective for SPAWN, as listed in the Sacramento/San Joaquin River Basin Plan; these sample and exceedance counts do not exceed the allowable frequency listed in Table 3.2 of the Listing Policy. 4. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be placed on the section 303(d) list because applicable water quality standards are not being exceeded.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 75479, Oxygen, Dissolved	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

70248

Pollutant:

Oxygen, Dissolved

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Dissolved

Beneficial Use:

Fish Spawning

Number of Samples:

107

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

SWAMP data indicates that zero of 107 sample results exceed the criterion for Oxygen, Dissolved.

Data Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

The minimum dissolved oxygen concentration for waters designated as SPWN is 7.0 mg/L. (Water Quality Control Plan, Central Valley Region, Sacramento River Basin and San Joaquin Basin)

Objective/Criterion Reference:

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Data for this line of evidence was collected at two monitoring sites [ SJR @ Maze - 541STC510, Blewitt MWC Drain at Hwy 132 - 541STC531]

Temporal Representation:

Data was collected over the time period 7/5/2007-6/25/2009.

Environmental Conditions:

Staff is not aware of any special conditions that might affect interpretation of the data.

QAPP Information:

The SWAMP QAPP (2008) was followed.

QAPP Information Reference(s):

Surface Water Ambient Monitoring Program Quality Assurance Program Plan

Line of Evidence (LOE) for Decision ID 75479, Oxygen, Dissolved	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

23345

Pollutant:

Oxygen, Dissolved

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Dissolved

Beneficial Use:

Cold Freshwater Habitat

Aquatic Life Use:

Cold Freshwater Habitat

Number of Samples:

252

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

Two hundred and fifty-two samples were taken from the San Joaquin River between 2004 and 2006. Two of the two hundred and fifty-two samples fell below the Water Quality Objective for minimum dissolved oxygen content in surface water.

Data Reference:

Monitoring Data from the Surface Water Ambient Monitoring Program (SWAMP), San Joaquin River Basin - 2007 Data Review

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

From the Sacramento/San Joaquin River Basin Plan the (COLD) Cold Freshwater Habitat criterion is a Minimum Dissolved Oxygen content of 7mg/L.

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Samples were collected from the San Joaquin River at Maze Boulevard.

Temporal Representation:

Samples were collected between June 2001 and June 2006. Samples were collected at bi-monthly and monthly intervals.

Environmental Conditions:

QAPP Information:

QAPP Information Reference(s):

Quality Assurance Management Plan for the State of California's Surface Water Ambient Monitoring Program. Sacramento, CA. State Water Resources Control Board. SWAMP. December 2002 (1st version)

Line of Evidence (LOE) for Decision ID 75479, Oxygen, Dissolved	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

70250

Pollutant:

Oxygen, Dissolved

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Dissolved

Beneficial Use:

Fish Spawning

Number of Samples:

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

Water Board staff assessed Ag Waiver data to determine beneficial use support: None of 3 sample results exceed the criterion for Oxygen, Dissolved.

Data Reference:

Data for Various Pollutants in East San Joaquin, 2004-2009.

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

The minimum dissolved oxygen concentration for waters designated as SPWN is 7.0 mg/L. (Water Quality Control Plan, Central Valley Region, Sacramento River Basin and San Joaquin River Basin)

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Data for this line of evidence was collected at one monitoring site [SJR @ Maze-541STC510].

Temporal Representation:

Data was collected on three dates in 2010.

Environmental Conditions:

Staff is not aware of any special conditions that might affect interpretation of the data.

QAPP Information:

The Quality Assurance Project Plan by the East San Joaquin Water Quality Coalition, Revision 1.0 was followed.

QAPP Information Reference(s):

Quality Assurance Project Plan by the East San Joaquin Water Quality Coalition, Revision 1.0.

Line of Evidence (LOE) for Decision ID 75479, Oxygen, Dissolved	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

59522

Pollutant:

Oxygen, Dissolved

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Dissolved

Beneficial Use:

Cold Freshwater Habitat

Number of Samples:

107

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

Zero of the 107 samples collected exceeded the objective.

Data Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

The dissolved oxygen concentrations shall not be reduced below the following minimum levels at any time: Waters designated COLD 7.0 mg/l

Objective/Criterion Reference:

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Samples were collected from the Blewitt MWC Drain at Hwy 132 (541STC531) and San Joaquin River above Maze Boulevard (541STC510) stations.

Temporal Representation:

Samples were collected approximately once a week from July 2007 to June 2009.

Environmental Conditions:

QAPP Information:

SWAMP QAPP

QAPP Information Reference(s):

Surface Water Ambient Monitoring Program Quality Assurance Program Plan

Line of Evidence (LOE) for Decision ID 75479, Oxygen, Dissolved	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

70249

Pollutant:

Oxygen, Dissolved

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Dissolved

Beneficial Use:

Cold Freshwater Habitat

Number of Samples:

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

Water Board staff assessed Ag Waiver data to determine beneficial use support: None of 3 sample results exceed the criterion for Oxygen, Dissolved.

Data Reference:

Data for Various Pollutants in East San Joaquin, 2004-2009.

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

The minimum dissolved oxygen concentration for waters designated as COLD is 7.0 mg/L. (Water Quality Control Plan, Central Valley Region, Sacramento River Basin and San Joaquin River Basin)

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Data for this line of evidence was collected at one monitoring site [SJR @ Maze-541STC510].

Temporal Representation:

Data was collected on three dates in 2010.

Environmental Conditions:

Staff is not aware of any special conditions that might affect interpretation of the data.

QAPP Information:

The Quality Assurance Project Plan by the East San Joaquin Water Quality Coalition, Revision 1.0 was followed.

QAPP Information Reference(s):

Quality Assurance Project Plan by the East San Joaquin Water Quality Coalition, Revision 1.0.


DECISION ID	70384	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Zinc
Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for listing under sections 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. Data is available from 2 lines of evidence for this pollutant. Based on the readily available data and information, the weight of evidence indicates that there is not sufficient justification for placing this water segment-pollution combination on the section 303(d) list. The recommendation is based on staff findings that 1 of 17 available concentrations exceeded the water quality objective and this does not exceed the allowable frequency using Table 3.1 of the Listing Policy. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	This is a decision previously approved by the State Water Resources Control Board and the USEPA. No new data were assessed by the Regional Board for the current cycle. The decision has not changed.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 70384, Zinc	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

6614

Pollutant:

Zinc

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Dissolved

Beneficial Use:

Warm Freshwater Habitat

Number of Samples:

Number of Exceedances:

Data and Information Type:

Not Specified

Data Used to Assess Water Quality:

Zero of the 17 samples collected by the Surface Water Ambient Monitoring Program exceeded the calculated CTR CMC for dissolved zinc

Data Reference:

San Joaquin River SWAMP Monitoring Data - Main-Stem San Joaquin River

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

Dissolved zinc levels should not exceed the calculated CTR limit based on the formula: Criteria Maximum Concentration=EXP((0.8473*LN(hardness))+0.884)*(0.978)

Objective/Criterion Reference:

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Samples were collected from the San Joaquin River at Maze Boulevard

Temporal Representation:

The samples were collected between November 30, 2000, and November 21, 2002

Environmental Conditions:

QAPP Information:

Monitoring was conducted in accordance with the State Water Resources Control Board's Quality Assurance Program Plan for the State of California's Surface Water Ambient Monitoring Program.

QAPP Information Reference(s):


DECISION ID	73253	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	alpha.-BHC (Benzenehexachloride or alpha-HCH)
Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for placement on the section 303(d) list under section 3.1 of the Listing Policy. Under section 3.1 a single line of evidence is necessary to assess listing status. One lines of evidence are available in the administrative record to assess this pollutant. None of the samples exceed the water quality objective. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against placing this water segment-pollutant combination on the section 303(d) list in the Water Quality Limited Segments category. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. None of 20 samples exceeded the minimum criterion Water Quality Objectives for Alpha-HCH listed under the National Ambient Water Quality Criteria and this does not exceed the allowable frequency listed in Table 3.1 of the Listing Policy. 4. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	This is a decision previously approved by the State Water Resources Control Board and the USEPA. No new data were assessed by the Regional Board for the current cycle. The decision has not changed.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 73253, alpha.-BHC (Benzenehexachloride or alpha-HCH)	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

23421

Pollutant:

alpha.-BHC (Benzenehexachloride or alpha-HCH)

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Total

Beneficial Use:

Municipal & Domestic Supply

Number of Samples:

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

- Twenty water samples were taken from the San Joaquin River at Maze Road bridge near Modesto between April 2001 and August 2001. None of the available twenty water samples exceeded the minimum criterion for Alpha-HCH in surface water listed under the National Ambient Water Quality Criteria.- The twenty samples had high Reporting Limits hence the data could not be used in the analysis (Listing Policy Section 6.5.1.1) (SWRCB, 2004).

Data Reference:

National Water Quality Assessment database, San Joaquin and Tulare Basins data

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

Total identifiable persistent chlorinated hydrocarbon pesticides shall not be present in the water column at concentrations detectable within the accuracy of analytical methods approved by the Environmental Protection Agency or the Executive Officer (CVRWQCB, 2007).

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

National Ambient Water Quality Criteria Guideline <0.0026 g/L.

Guideline Reference:

Spatial Representation:

Samples were collected from the San Joaquin River at Maze Road bridge near Modesto, California.

Temporal Representation:

Samples were collected between April 2001 and August 2001. Samples were collected at weekly intervals.

Environmental Conditions:

QAPP Information:

Data quality: Good. In accordance with section 6.1.4 of the Listing Policy, data from major monitoring programs in California and Published USGS reports are considered of adequate quality.

QAPP Information Reference(s):


DECISION ID	74357	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	pH
Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	Do Not List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	This pollutant is being considered for placement on the section 303(d) list under section 3.2 of the Listing Policy. Under section 3.2 a single line of evidence is necessary to assess listing status. Two lines of evidence are available in the administrative record to assess this pollutant. Forty-seven of the 639 water sample measurements exceed the water quality objective. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against placing this water segment-pollutant combination on the section 303(d) list in the Water Quality Limited Segments category. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. Forty-seven of the 639 water sample measurements exceeded the pH objective and this does not exceed the allowable frequency listed in Table 3.2 of the Listing Policy. 4. Pursuant to section 3.11 of the Listing Policy, no additional data and information are available indicating that standards are not met.

Regional Board Decision Recommendation:	After review of the available data and information, RWQCB staff concludes that the water body-pollutant combination should not be placed on the section 303(d) list because applicable water quality standards are not being exceeded.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 74357, pH	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

70251

Pollutant:

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

None

Beneficial Use:

Warm Freshwater Habitat

Aquatic Life Use:

Warm Freshwater Habitat

Number of Samples:

107

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

SWAMP data indicates that 15 of 107 sample results exceed the criterion for pH.

Data Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

pH should not be lower than 6.5 or higher than 8.5. (Water Quality Control Plan, Central Valley Region, Sacramento River Basin and San Joaquin River Basin)

Objective/Criterion Reference:

Evaluation Guideline:

Guideline Reference:

Effects of Temperature, Dissolved Oxygen/Total Dissolved Gas, Ammonia, and pH on Salmonids. Implications for California's North Coast TMDLs. California Regional Water Quality Control Board, North Coast Region

Spatial Representation:

Data for this line of evidence was collected at two monitoring sites [ SJR @ Maze - 541STC510, Blewitt MWC Drain at Hwy 132 - 541STC531]

Temporal Representation:

Data was collected over the time period 7/5/2007-6/25/2009.

Environmental Conditions:

Staff is not aware of any special conditions that might affect interpretation of the data.

QAPP Information:

The SWAMP QAPP (2008) was followed.

QAPP Information Reference(s):

Surface Water Ambient Monitoring Program Quality Assurance Program Plan

Line of Evidence (LOE) for Decision ID 74357, pH	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

23347

Pollutant:

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

None

Beneficial Use:

Warm Freshwater Habitat

Aquatic Life Use:

Warm Freshwater Habitat

Number of Samples:

532

Number of Exceedances:

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

The Central Valley Regional Water Quality Control Board Surface Water Ambient Monitoring Program collected 532 samples from October 1995 to June 2006. Thirty-two out of 532 samples were outside the acceptable range; twenty-five samples were higher than the acceptable range and seven samples were lower than the acceptable range.

Data Reference:

Monitoring Data from the Surface Water Ambient Monitoring Program (SWAMP), San Joaquin River Basin - 2007 Data Review

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

The pH of water shall not be depressed below 6.5,raised above 8.5, or changed at any time more than 0.5 units from normal ambient pH.

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Samples were collected from San Joaquin River at Maze Boulevard.

Temporal Representation:

Sampling occurred from October 1995 to June 2006.

Environmental Conditions:

QAPP Information:

QAPP Information Reference(s):

Quality Assurance Management Plan for the State of California's Surface Water Ambient Monitoring Program. Sacramento, CA. State Water Resources Control Board. SWAMP. December 2002 (1st version)


DECISION ID	72568	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	DDT (Dichlorodiphenyltrichloroethane)
Final Listing Decision:	List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Sources:	A Source Unknown
Expected TMDL Completion Date:	2027
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	303(d) listing decisions made prior to 2006 were not held in an assessment database. The Regional Boards will update this decision when new data and information become available and are assessed.

Regional Board Decision Recommendation:	This is a decision previously approved by the State Water Resources Control Board and the USEPA. No new data were assessed by the Regional Board for the current cycle. The decision has not changed.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 72568, DDT (Dichlorodiphenyltrichloroethane)	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

4544

Pollutant:

DDT (Dichlorodiphenyltrichloroethane)

LOE Subgroup:

Pollutant-Tissue

Matrix:

Tissue

Fraction:

Not Recorded

Beneficial Use:

Commercial or recreational collection of fish, shellfish, or organisms

Number of Samples:

Number of Exceedances:

Data and Information Type:

Not Specified

Data Used to Assess Water Quality:

Unspecified--This LOE is a placeholder to support a 303(d) listing decision made prior to 2006.

Data Reference:

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

Unspecified

Objective/Criterion Reference:

Evaluation Guideline:

Unspecified

Guideline Reference:

USEPA Region 9 data summary for addition of electrical conductivity and total dissolved solids to California 2010 303(d) list for some Central Valley - Region 5 water bodies

Spatial Representation:

Unspecified

Temporal Representation:

Unspecified

Environmental Conditions:

Unspecified

QAPP Information:

Unspecified

QAPP Information Reference(s):


DECISION ID	76269	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Electrical Conductivity
Final Listing Decision:	List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Sources:	A Source Unknown
Expected TMDL Completion Date:	2027
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	The decision has not changed. USEPA Final Approval Decision Details: The November 12, 2010 USEPA partial approval letter and the October 11, 2011 final approval letter both from Alexis Strauss, USEPA Region 9, to Tom Howard, SWRCB, concluded the following: The 2010 303(d) list transmittal letter from Thomas Howard, SWRCB, to Alexis Strauss, USEPA Region 9, dated October 11, 2010 identified this water body pollutant combination as being held in abeyance due to existing litigation. According to the November 12, 2010 USEPA partial approval, partial disapproval letter and enclosure for California's 2008-2010 list (from Alexis Strauss, USEPA Region 9, to Tom Howard, SWRCB), USEPA stated that it understood the State Water Board's October 11, 2010 transmittal letter, which held several of its listing recommendations in abeyance, as "the State is not listing" those water body-pollutant combinations (enclosure, at pages 6-7). USEPA has added this water body pollutant combination listed in 2004-2006 because upon request to the State for good cause for delisting, USEPA did not receive a water quality based reason for their delisting. For this segment, no new data was included in the factsheet or supporting documentation to support removal of the impairment from the Section 303(d) List. USEPA has carefully reviewed SWAMP data and continues to find significant impairment throughout the San Joaquin River from Bear Creek to the Stanislaus River. The USEPA electrical conductivity data summary for the San Joaquin River (Tuolumne River to Stanislaus River) is as follows: For the Agricultural (AGR) beneficial use, the maximum 30 day running average for April 1 to August 31 is 0.7 uS/mm and for Sept 1 - March 31 is 1.0 uS/mm. For this segment, there were 3745 samples to assess the AGR beneficial use. Of those 3745 samples, 1102 samples exceeded the objective. For the Municipal and Domestic Water Supply (MUN) beneficial use, the objective is 900 uS/cm. For this segment, there were 537 samples to assess the MUN beneficial use. Of those 537 samples, 238 exceeded the objective. Observed exceedances are greater than the 10% exceedance threshold for conventional and other pollutants as expressed in Table 3.2 of the State Listing Policy. For clarification, the Regional Water Board decision recommendation made prior to USEPA's final decision is presented below: Note: All lines of evidence (LOEs) previously made by the Regional Boards have been revised where necessary to reflect USEPA's final decision. In some cases, LOEs have been created to reflect USEPA's analysis. Regional Board Decision Recommendation (prior to State Water Board approval): This pollutant is being considered for removal from the section 303(d) list under section 4.2 of the Listing Policy. Under this section a single line of evidence is necessary to assess listing status. One line of evidence is available in the administrative record to assess this pollutant. One hundred and sixty-two samples exceed the water quality objective. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against removing this water segment-pollutant combination from the section 303(d) list. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. One hundred and sixty-two of 556 samples exceeded the water quality objective for electrical conductivity and these exceed the allowable frequency listed in Table 4.2 of the Listing Policy. 4. Pursuant to section 4.11 of the Listing Policy, no additional data and information are available indicating that standards are met.

Regional Board Decision Recommendation:	This is a decision previously approved by the State Water Resources Control Board and the USEPA. No new data were assessed by the Regional Board for the current cycle. The decision has not changed.

State Board Review of Regional Board Conclusion and Recommendation:	For clarification, the Regional Water Board decision recommendation made prior to USEPA's final decision is presented below: Note: All lines of evidence (LOEs) previously made by the Regional Boards have been revised where necessary to reflect USEPA's final decision. In some cases, LOEs have been created to reflect USEPA's analysis. Regional Board Decision Recommendation (prior to State Water Board approval): This pollutant is being considered for removal from the section 303(d) list under section 4.2 of the Listing Policy. Under this section a single line of evidence is necessary to assess listing status. One line of evidence is available in the administrative record to assess this pollutant. One hundred and sixty-two samples exceed the water quality objective. Based on the readily available data and information, the weight of evidence indicates that there is sufficient justification against removing this water segment-pollutant combination from the section 303(d) list. This conclusion is based on the staff findings that: 1. The data used satisfies the data quality requirements of section 6.1.4 of the Policy. 2. The data used satisfies the data quantity requirements of section 6.1.5 of the Policy. 3. One hundred and sixty-two of 556 samples exceeded the water quality objective for electrical conductivity and these exceed the allowable frequency listed in Table 4.2 of the Listing Policy. 4. Pursuant to section 4.11 of the Listing Policy, no additional data and information are available indicating that standards are met.

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 76269, Electrical Conductivity	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

22641

Pollutant:

Electrical Conductivity

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Total

Beneficial Use:

Municipal & Domestic Supply

Number of Samples:

537

Number of Exceedances:

238

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

For the Municpal and Domestic Water Supply (MUN) beneficial use, the objective is 900 uS/cm. For this segment, there were 537 samples to assess the MUN beneficial use. Of those 537 samples, 238 exceeded the California Secondary MCL for Municipal Water Quality Objectives for electrical conductivity in surface water.

Data Reference:

Monitoring Data from the Surface Water Ambient Monitoring Program (SWAMP), San Joaquin River Basin - 2007 Data Review

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

The water quality objective used was the California Secondary MCL recommended level of 900 uS/cm. The Basin Plan includes chemical constituent water quality objectives that include (by reference) secondary maximum contaminant levels (MCL's) protective of MUN (CVRWQCB, 2007a).The secondary MCL's for electrical conductivity provide a range of values including a recommended level (900 uS/cm), upper level (1600 uS/cm) and a short-term level (2200 uS/cm). The 'recommended' concentration was used as it is intended to be protective of all drinking water uses. Though individual listing evaluations did not look at the water supply source serving the given geographic area, there are certain areas that receive supply waters (such as the Delta Mendota Canal) that at times may be elevated above the recommended level of the secondary MCL. Where future information is made available to document this to be the case, these water bodies may be re-evaluated in future listing cycles.

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Objective/Criterion Reference:

California Code of Regulations, Title 22, Division 4, Chapter 15. Domestic Water Quality and Monitoring

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Samples were collected from San Joaquin River at Maze Road at Hwy 132 (Lat 37 38 31, Long 121 13 40) in San Joaquin County, CA.

Temporal Representation:

Samples were collected between October 1995 and October 2006. Samples were collected at approximately weekly intervals.

Environmental Conditions:

QAPP Information:

QAPP Information Reference(s):

Quality Assurance Management Plan for the State of California's Surface Water Ambient Monitoring Program. Sacramento, CA. State Water Resources Control Board. SWAMP. December 2002 (1st version)

Line of Evidence (LOE) for Decision ID 76269, Electrical Conductivity	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

31465

Pollutant:

Electrical Conductivity

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

Total

Beneficial Use:

Agricultural Supply

Number of Samples:

3745

Number of Exceedances:

1102

Data and Information Type:

PHYSICAL/CHEMICAL MONITORING

Data Used to Assess Water Quality:

For this segment, there were 3745 samples to assess the AGR beneficial use. Of those 3745 samples, 1102 samples exceeded the objective.

Data Reference:

USEPA Region 9 data summary for addition of electrical conductivity and total dissolved solids to California 2010 303(d) list for some Central Valley - Region 5 water bodies

Monitoring Data from the Surface Water Ambient Monitoring Program (SWAMP), San Joaquin River Basin - 2007 Data Review

SWAMP Data:

SWAMP

Water Quality Objective/Criterion:

For the Agricultural (AGR) beneficial use, the Basin Plan "recommended" maximum 30-day running average for April 1 to August 31 is 0.7 uS/mm and for Sept 1 - March 31 is 1.0 uS/mm.

Objective/Criterion Reference:

Water Quality Control Plan for the California Regional Water Quality Control Board Central Valley Region, Sacramento and San Joaquin River Basins. 4th ed

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Samples were collected from San Joaquin River at Maze Road at Hwy 132 in San Joaquin County, CA (Lat 37 38 31, Long 121 13 40).

Temporal Representation:

Samples were collected between October 1995 and October 2006. Samples were collected at approximately weekly intervals.

Environmental Conditions:

QAPP Information:

QAPP Information Reference(s):

Quality Assurance Management Plan for the State of California's Surface Water Ambient Monitoring Program. Sacramento, CA. State Water Resources Control Board. SWAMP. December 2002 (1st version)

Line of Evidence (LOE) for Decision ID 76269, Electrical Conductivity	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

2741

Pollutant:

Electrical Conductivity

LOE Subgroup:

Pollutant-Water

Matrix:

Water

Fraction:

None

Beneficial Use:

Agricultural Supply

Number of Samples:

Number of Exceedances:

Data and Information Type:

Not Specified

Data Used to Assess Water Quality:

Unspecified--This LOE is a placeholder to support a 303(d) listing decision made prior to 2006.

Data Reference:

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

Objective/Criterion Reference:

Evaluation Guideline:

Guideline Reference:

Spatial Representation:

Temporal Representation:

Environmental Conditions:

QAPP Information:

QA Info Missing

QAPP Information Reference(s):


DECISION ID	70034	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Group A Pesticides
Final Listing Decision:	List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Sources:	A Source Unknown
Expected TMDL Completion Date:	2011
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	303(d) listing decisions made prior to 2006 were not held in an assessment database. The Regional Boards will update this decision when new data and information become available and are assessed.

Regional Board Decision Recommendation:	This is a decision previously approved by the State Water Resources Control Board and the USEPA. No new data were assessed by the Regional Board for the current cycle. The decision has not changed.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 70034, Group A Pesticides	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

4545

Pollutant:

Group A Pesticides

LOE Subgroup:

Pollutant-Tissue

Matrix:

Tissue

Fraction:

Not Recorded

Beneficial Use:

Commercial or recreational collection of fish, shellfish, or organisms

Number of Samples:

Number of Exceedances:

Data and Information Type:

Not Specified

Data Used to Assess Water Quality:

Unspecified--This LOE is a placeholder to support a 303(d) listing decision made prior to 2006.

Data Reference:

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

Unspecified

Objective/Criterion Reference:

Evaluation Guideline:

Unspecified

Guideline Reference:

Spatial Representation:

Unspecified

Temporal Representation:

Unspecified

Environmental Conditions:

Unspecified

QAPP Information:

Unspecified

QAPP Information Reference(s):


DECISION ID	72569	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

Pollutant:	Mercury
Final Listing Decision:	List on 303(d) list (TMDL required list)
Last Listing Cycle's Final Listing Decision:	List on 303(d) list (TMDL required list)(2016)
Revision Status	Original
Sources:	A Source Unknown
Expected TMDL Completion Date:	2012
Impairment from Pollutant or Pollution:	Pollutant

Regional Board Conclusion:	303(d) listing decisions made prior to 2006 were not held in an assessment database. The Regional Boards will update this decision when new data and information become available and are assessed.

Regional Board Decision Recommendation:	This is a decision previously approved by the State Water Resources Control Board and the USEPA. No new data were assessed by the Regional Board for the current cycle. The decision has not changed.

State Board Review of Regional Board Conclusion and Recommendation:

State Board Decision Recommendation:	After review of this Regional Board decision, SWRCB staff recommend the decision be approved by the State Board.

Line of Evidence (LOE) for Decision ID 72569, Mercury	Region 5
San Joaquin River ( Tuolumne River to Stanislaus River)

LOE ID:

4546

Pollutant:

Mercury

LOE Subgroup:

Pollutant-Tissue

Matrix:

Tissue

Fraction:

Not Recorded

Beneficial Use:

Commercial or recreational collection of fish, shellfish, or organisms

Number of Samples:

Number of Exceedances:

Data and Information Type:

Not Specified

Data Used to Assess Water Quality:

Unspecified--This LOE is a placeholder to support a 303(d) listing decision made prior to 2006.

Data Reference:

SWAMP Data:

Non-SWAMP

Water Quality Objective/Criterion:

Unspecified

Objective/Criterion Reference:

Evaluation Guideline:

Unspecified

Guideline Reference: